Variant report

Variant	rs73934749
Chromosome Location	chr2:63896251-63896252
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11894281	0.81[EUR][1000 genomes]
rs13424973	0.81[AFR][1000 genomes]
rs17028097	0.84[EUR][1000 genomes]
rs59719539	0.81[EUR][1000 genomes]
rs60414642	0.81[EUR][1000 genomes]
rs61013066	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72889330	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72889367	0.81[EUR][1000 genomes]
rs72889380	0.81[EUR][1000 genomes]
rs72889381	0.81[EUR][1000 genomes]
rs7559197	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1792289	chr2:63812148-63900292	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63883600-63900400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:63891800-63903400	Weak transcription	Aorta	Aorta
3	chr2:63893000-63896400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr2:63893000-63896400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr2:63893000-63897800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:63893200-63896400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr2:63893200-63898600	Enhancers	Adipose Nuclei	Adipose
8	chr2:63893400-63896400	Enhancers	Liver	Liver
9	chr2:63893600-63896400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr2:63893600-63900800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:63894600-63896400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:63895400-63900600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:63896000-63896400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr2:63896000-63896400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr2:63896200-63897400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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