Variant report

Variant	rs72889380
Chromosome Location	chr2:63980770-63980771
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11540495	0.90[EUR][1000 genomes]
rs11893776	0.95[EUR][1000 genomes]
rs11894281	0.90[EUR][1000 genomes]
rs11904498	0.88[EUR][1000 genomes]
rs57135216	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58169051	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59719539	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60414642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6714745	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72889330	0.84[EUR][1000 genomes]
rs72889367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72889381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72889398	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72889399	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72891012	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73934749	0.81[EUR][1000 genomes]
rs7557394	0.81[AFR][1000 genomes]
rs7559197	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63970400-63982200	Weak transcription	Psoas Muscle	Psoas
2	chr2:63973000-63992800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr2:63973200-63990400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr2:63974800-63982200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:63975200-63990200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:63976400-64028600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:63976600-63983200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr2:63978800-63981200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:63980400-63981000	Strong transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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