Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:64015319..64017822-chr2:64021923..64023829,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11540495	0.93[EUR][1000 genomes]
rs11885702	0.82[EUR][1000 genomes]
rs11893776	0.88[EUR][1000 genomes]
rs11894281	0.88[EUR][1000 genomes]
rs11904498	0.91[EUR][1000 genomes]
rs57135216	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58169051	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59719539	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60414642	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6714745	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6740299	0.81[EUR][1000 genomes]
rs71393337	0.81[EUR][1000 genomes]
rs72889330	0.82[EUR][1000 genomes]
rs72889367	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72889380	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72889381	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72889398	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72891012	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7557394	0.81[EUR][1000 genomes]
rs7559197	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63976400-64028600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:64017000-64023400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:64017800-64023800	Weak transcription	Psoas Muscle	Psoas
4	chr2:64018600-64025600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:64018800-64022800	Weak transcription	Adipose Nuclei	Adipose
6	chr2:64019000-64023600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr2:64019000-64029000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr2:64019800-64023800	Weak transcription	Liver	Liver
9	chr2:64020000-64023600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr2:64020400-64023400	Weak transcription	Osteobl	bone
11	chr2:64020400-64032000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:64020600-64023600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:64020800-64023400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr2:64020800-64025200	Weak transcription	Muscle Satellite Cultured Cells	--

Quick Search: