Variant report

Variant	rs60414642
Chromosome Location	chr2:63952881-63952882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11540495	0.90[EUR][1000 genomes]
rs11893776	0.95[EUR][1000 genomes]
rs11894281	0.90[EUR][1000 genomes]
rs11904498	0.88[EUR][1000 genomes]
rs57135216	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58169051	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59719539	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6714745	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72889330	0.84[EUR][1000 genomes]
rs72889367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72889380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72889381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72889398	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72889399	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72891012	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73934749	0.81[EUR][1000 genomes]
rs7557394	0.81[AFR][1000 genomes]
rs7559197	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63926800-63956600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:63943000-63956600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:63952200-63954200	Weak transcription	Liver	Liver
4	chr2:63952400-63956600	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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