Variant report

Variant	rs72891012
Chromosome Location	chr2:64059564-64059565
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11540495	0.95[EUR][1000 genomes]
rs11885702	0.82[AMR][1000 genomes]
rs11893776	0.91[EUR][1000 genomes]
rs11894281	0.81[EUR][1000 genomes]
rs11904498	0.93[EUR][1000 genomes]
rs57135216	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58169051	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59719539	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60414642	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6714745	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72889367	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72889380	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72889381	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72889398	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72889399	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72891006	0.97[AFR][1000 genomes]
rs72891008	0.97[AFR][1000 genomes]
rs7559197	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64047800-64066600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:64053200-64064400	Weak transcription	Aorta	Aorta
3	chr2:64055200-64064400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr2:64055200-64067200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:64055400-64063600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:64055400-64066400	Weak transcription	Psoas Muscle	Psoas
7	chr2:64055600-64064000	Weak transcription	HMEC	breast
8	chr2:64056400-64064200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr2:64059200-64059600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr2:64059200-64059600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr2:64059200-64059600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:64059200-64059600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr2:64059400-64059800	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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