Variant report

No.	Distal block	Cell Line	Cell type
1	chr2:64060057..64062099-chr2:64066751..64069578,4	K562	blood:
2	chr2:64052722..64054582-chr2:64057753..64060743,2	K562	blood:
3	chr2:63951955..63953535-chr2:64058753..64060771,2	MCF-7	breast:
4	chr2:63925442..63927694-chr2:64060712..64063478,2	MCF-7	breast:
5	chr2:64059098..64062117-chr2:64066457..64069850,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169764	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11540495	0.98[EUR][1000 genomes]
rs11885702	0.82[AMR][1000 genomes]
rs11893776	0.88[CEU][hapmap];0.93[EUR][1000 genomes]
rs11894281	0.83[EUR][1000 genomes]
rs11904498	0.95[EUR][1000 genomes]
rs57135216	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58169051	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59719539	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60414642	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6727909	1.00[CEU][hapmap];0.94[GIH][hapmap];0.86[MEX][hapmap]
rs6738024	0.90[CEU][hapmap];0.82[GIH][hapmap]
rs6740299	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[MKK][hapmap]
rs72889367	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72889380	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72889381	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72889398	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72889399	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72891006	0.96[AFR][1000 genomes]
rs72891008	0.96[AFR][1000 genomes]
rs72891012	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7559197	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7609385	0.90[CEU][hapmap];0.94[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64047800-64066600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:64053200-64064400	Weak transcription	Aorta	Aorta
3	chr2:64055200-64064400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr2:64055200-64067200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:64055400-64063600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:64055400-64066400	Weak transcription	Psoas Muscle	Psoas
7	chr2:64055600-64064000	Weak transcription	HMEC	breast
8	chr2:64056400-64064200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr2:64059600-64066600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr2:64059600-64066800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr2:64059800-64066800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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