Variant report

Variant	rs72889330
Chromosome Location	chr2:63909393-63909394
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11894281	0.84[EUR][1000 genomes]
rs17028097	0.95[EUR][1000 genomes]
rs58169051	0.82[EUR][1000 genomes]
rs59719539	0.84[EUR][1000 genomes]
rs60414642	0.84[EUR][1000 genomes]
rs61013066	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72889367	0.84[EUR][1000 genomes]
rs72889380	0.84[EUR][1000 genomes]
rs72889381	0.84[EUR][1000 genomes]
rs72889399	0.82[EUR][1000 genomes]
rs73934749	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7559197	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63896400-63911400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:63908400-63909400	Enhancers	NHEK	skin
3	chr2:63908800-63923400	Weak transcription	Adipose Nuclei	Adipose
4	chr2:63909200-63911400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:63909200-63925600	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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