Variant report

Variant	rs17619598
Chromosome Location	chr2:63940612-63940613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:63940451..63941029-chr2:170660145..170660970,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1023820	1.00[CHB][hapmap]
rs1031221	1.00[CHB][hapmap]
rs10469944	1.00[CHB][hapmap]
rs10469945	1.00[CHB][hapmap]
rs11125977	1.00[CHB][hapmap]
rs11693909	1.00[CHB][hapmap]
rs11694709	0.86[AFR][1000 genomes]
rs12105140	1.00[CHB][hapmap]
rs12473342	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1255	1.00[CHB][hapmap]
rs12713496	1.00[CHB][hapmap]
rs1446569	1.00[CHB][hapmap]
rs1550860	1.00[CHB][hapmap]
rs17028100	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs171901	1.00[CHB][hapmap]
rs17619855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1867847	1.00[CHB][hapmap]
rs196124	1.00[CHB][hapmap]
rs2121350	1.00[CHB][hapmap]
rs2166494	1.00[CHB][hapmap]
rs2305157	1.00[CHB][hapmap]
rs2422011	1.00[CHB][hapmap]
rs2604613	1.00[CHB][hapmap]
rs262470	1.00[CHB][hapmap]
rs262472	1.00[CHB][hapmap]
rs262473	1.00[CHB][hapmap]
rs262477	1.00[CHB][hapmap]
rs262478	1.00[CHB][hapmap]
rs262479	1.00[CHB][hapmap]
rs262490	1.00[CHB][hapmap]
rs262491	1.00[CHB][hapmap]
rs262527	1.00[CHB][hapmap]
rs262536	1.00[CHB][hapmap]
rs262537	1.00[CHB][hapmap]
rs34714807	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4671065	1.00[CHB][hapmap]
rs4671515	1.00[CHB][hapmap]
rs6546018	1.00[CHB][hapmap]
rs6546019	1.00[CHB][hapmap]
rs6708804	1.00[CHB][hapmap]
rs6717031	1.00[CHB][hapmap]
rs6730863	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6738190	1.00[CHB][hapmap]
rs7566718	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7570031	1.00[CHB][hapmap]
rs7576316	1.00[CHB][hapmap]
rs7584404	1.00[CHB][hapmap]
rs7606045	1.00[CHB][hapmap]
rs9309355	1.00[CHB][hapmap]
rs959195	1.00[CHB][hapmap]
rs964880	1.00[CHB][hapmap]
rs964903	1.00[CHB][hapmap]
rs9789351	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63926800-63956600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:63936200-63944400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:63938400-63946400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:63939200-63940800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:63939200-63941000	Enhancers	NHDF-Ad	bronchial
6	chr2:63939600-63941200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:63940200-63941200	Weak transcription	Fetal Muscle Leg	muscle
8	chr2:63940200-63943000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:63940600-63941000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:63940600-63941200	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr2:63940600-63941200	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr2:63940600-63946200	Weak transcription	Psoas Muscle	Psoas
13	chr2:63940600-63950600	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links