Variant report

Variant	rs4671066
Chromosome Location	chr2:63791951-63791952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10168545	0.86[EUR][1000 genomes]
rs10171223	0.81[EUR][1000 genomes]
rs10176522	0.83[EUR][1000 genomes]
rs1023820	0.85[EUR][1000 genomes]
rs10469944	0.85[EUR][1000 genomes]
rs10469945	0.85[EUR][1000 genomes]
rs1082363	0.83[EUR][1000 genomes]
rs10865337	0.83[EUR][1000 genomes]
rs10865338	0.85[EUR][1000 genomes]
rs10865339	0.85[EUR][1000 genomes]
rs11125977	0.84[EUR][1000 genomes]
rs11125978	0.85[EUR][1000 genomes]
rs112194	0.82[EUR][1000 genomes]
rs11693909	0.84[EUR][1000 genomes]
rs11898615	0.86[EUR][1000 genomes]
rs12105140	0.83[EUR][1000 genomes]
rs1255	0.83[EUR][1000 genomes]
rs12713496	0.85[EUR][1000 genomes]
rs12990914	0.86[EUR][1000 genomes]
rs1446564	0.85[EUR][1000 genomes]
rs1446565	0.85[EUR][1000 genomes]
rs1446569	0.85[EUR][1000 genomes]
rs1550860	0.85[EUR][1000 genomes]
rs166384	0.83[EUR][1000 genomes]
rs174485	0.82[EUR][1000 genomes]
rs185499	0.82[EUR][1000 genomes]
rs1867847	0.87[EUR][1000 genomes]
rs1867849	0.85[EUR][1000 genomes]
rs187801	0.81[EUR][1000 genomes]
rs196124	0.82[EUR][1000 genomes]
rs196125	0.82[EUR][1000 genomes]
rs2028883	0.85[EUR][1000 genomes]
rs2028887	0.83[EUR][1000 genomes]
rs2084200	0.82[EUR][1000 genomes]
rs2121350	0.87[EUR][1000 genomes]
rs2121351	0.84[EUR][1000 genomes]
rs2166494	0.86[EUR][1000 genomes]
rs2166497	0.86[EUR][1000 genomes]
rs2305157	0.81[EUR][1000 genomes]
rs2422011	0.87[EUR][1000 genomes]
rs2604613	0.83[EUR][1000 genomes]
rs262470	0.84[EUR][1000 genomes]
rs262471	0.80[EUR][1000 genomes]
rs262472	0.83[EUR][1000 genomes]
rs262473	0.84[EUR][1000 genomes]
rs262474	0.81[EUR][1000 genomes]
rs262475	0.82[EUR][1000 genomes]
rs262476	0.82[EUR][1000 genomes]
rs262477	0.82[EUR][1000 genomes]
rs262478	0.80[EUR][1000 genomes]
rs262479	0.82[EUR][1000 genomes]
rs262480	0.82[EUR][1000 genomes]
rs262481	0.81[EUR][1000 genomes]
rs262482	0.82[EUR][1000 genomes]
rs262483	0.82[EUR][1000 genomes]
rs262484	0.82[EUR][1000 genomes]
rs262485	0.82[EUR][1000 genomes]
rs262487	0.82[EUR][1000 genomes]
rs262488	0.82[EUR][1000 genomes]
rs262489	0.81[EUR][1000 genomes]
rs262490	0.82[EUR][1000 genomes]
rs262493	0.84[EUR][1000 genomes]
rs262495	0.85[EUR][1000 genomes]
rs262501	0.83[EUR][1000 genomes]
rs262502	0.81[EUR][1000 genomes]
rs262503	0.83[EUR][1000 genomes]
rs262504	0.82[EUR][1000 genomes]
rs262505	0.80[EUR][1000 genomes]
rs262506	0.82[EUR][1000 genomes]
rs262507	0.80[EUR][1000 genomes]
rs2901614	0.86[EUR][1000 genomes]
rs4671065	0.86[EUR][1000 genomes]
rs4671067	0.84[EUR][1000 genomes]
rs4671068	0.87[EUR][1000 genomes]
rs4671069	0.83[EUR][1000 genomes]
rs4671512	0.83[EUR][1000 genomes]
rs4671514	0.81[EUR][1000 genomes]
rs4671515	0.85[EUR][1000 genomes]
rs4671516	0.85[EUR][1000 genomes]
rs4671519	0.85[EUR][1000 genomes]
rs6546007	0.85[EUR][1000 genomes]
rs6546009	0.85[EUR][1000 genomes]
rs6546016	0.81[EUR][1000 genomes]
rs6546017	0.86[EUR][1000 genomes]
rs6546018	0.85[EUR][1000 genomes]
rs6546019	0.85[EUR][1000 genomes]
rs6706123	0.85[EUR][1000 genomes]
rs6708804	0.86[EUR][1000 genomes]
rs6717031	0.87[EUR][1000 genomes]
rs6724160	0.84[EUR][1000 genomes]
rs6732791	0.86[EUR][1000 genomes]
rs6734648	0.86[EUR][1000 genomes]
rs6736029	0.86[EUR][1000 genomes]
rs6738190	0.85[EUR][1000 genomes]
rs6754730	0.81[EUR][1000 genomes]
rs68183503	0.84[EUR][1000 genomes]
rs7563623	0.85[EUR][1000 genomes]
rs7570031	0.84[EUR][1000 genomes]
rs7571017	0.86[EUR][1000 genomes]
rs7571325	0.85[EUR][1000 genomes]
rs7576316	0.86[EUR][1000 genomes]
rs7577952	0.86[EUR][1000 genomes]
rs7584404	0.86[EUR][1000 genomes]
rs7606045	0.82[EUR][1000 genomes]
rs7607257	0.84[EUR][1000 genomes]
rs7608513	0.85[EUR][1000 genomes]
rs959195	0.86[EUR][1000 genomes]
rs964880	0.83[EUR][1000 genomes]
rs964903	0.85[EUR][1000 genomes]
rs9789351	0.85[EUR][1000 genomes]
rs989527	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4671066	WDPCP	cis	Adipose Subcutaneous	GTEx
rs4671066	MDH1	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63777400-63806800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:63778800-63794000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:63780200-63814800	Weak transcription	Psoas Muscle	Psoas
4	chr2:63780800-63792200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr2:63781000-63793200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:63781000-63804000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:63782600-63793400	Weak transcription	Lung	lung
8	chr2:63783400-63798600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr2:63783600-63793800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr2:63787000-63793800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr2:63787600-63793200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr2:63789000-63793200	Weak transcription	Primary B cells from cord blood	blood
13	chr2:63789000-63808200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:63789000-63808200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr2:63789200-63793000	Weak transcription	HSMMtube	muscle
16	chr2:63789200-63793200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr2:63789400-63793200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr2:63789400-63793200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr2:63789400-63794200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr2:63789400-63796600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr2:63789600-63793200	Weak transcription	Primary T cells from cord blood	blood
22	chr2:63789600-63795800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr2:63790600-63803000	Weak transcription	Fetal Heart	heart
24	chr2:63791000-63793400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr2:63791200-63793200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr2:63791400-63794600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr2:63791600-63793200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr2:63791600-63793200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr2:63791600-63793200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr2:63791800-63792000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr2:63791800-63793000	Weak transcription	Liver	Liver
32	chr2:63791800-63793200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr2:63791800-63798800	Weak transcription	Adipose Nuclei	Adipose

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