Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:55150702..55153122-chr2:55154482..55158457,3	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1012603	1.00[CEU][hapmap]
rs10496034	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10496040	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs17046514	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17046518	0.81[EUR][1000 genomes]
rs17046583	0.85[CEU][hapmap]
rs17046643	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17046658	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs2028728	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2241958	0.82[EUR][1000 genomes]
rs2304687	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4233955	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4671991	0.93[CHB][hapmap]
rs4671993	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4671997	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4672006	0.84[EUR][1000 genomes]
rs4672009	0.82[EUR][1000 genomes]
rs4672011	1.00[CEU][hapmap]
rs60553807	0.90[EUR][1000 genomes]
rs61486548	0.90[AMR][1000 genomes]
rs733916	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73936818	0.82[EUR][1000 genomes]
rs73936829	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834069	chr2:55096597-55251680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55134000-55153800	Weak transcription	Brain Angular Gyrus	brain
2	chr2:55134400-55153600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:55148600-55155600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:55150000-55168400	Weak transcription	Pancreas	Pancrea
5	chr2:55150800-55151200	Enhancers	A549	lung

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