Variant report

Variant	rs4672129
Chromosome Location	chr2:56761806-56761807
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10165392	0.83[ASN][1000 genomes]
rs1016542	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs10165778	0.87[ASN][1000 genomes]
rs1017268	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1017269	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10175426	0.88[ASN][1000 genomes]
rs10189772	0.87[ASN][1000 genomes]
rs10208385	0.84[ASN][1000 genomes]
rs10490407	0.81[EUR][1000 genomes]
rs10490408	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10490409	0.85[EUR][1000 genomes]
rs10865295	0.88[ASN][1000 genomes]
rs11125634	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11125635	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11125636	0.88[ASN][1000 genomes]
rs1156671	0.88[ASN][1000 genomes]
rs1156672	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11694653	0.80[ASN][1000 genomes]
rs12470157	0.80[ASN][1000 genomes]
rs12471657	0.82[ASN][1000 genomes]
rs12471905	0.87[ASN][1000 genomes]
rs12475304	0.87[ASN][1000 genomes]
rs12619260	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12622337	0.82[ASN][1000 genomes]
rs13418332	0.89[ASN][1000 genomes]
rs1477521	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1477522	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17039629	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17048168	0.94[ASN][1000 genomes]
rs17048169	0.94[ASN][1000 genomes]
rs17048170	0.94[ASN][1000 genomes]
rs17048179	0.94[ASN][1000 genomes]
rs17048181	0.94[ASN][1000 genomes]
rs17048231	0.90[ASN][1000 genomes]
rs17268931	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1991185	0.83[ASN][1000 genomes]
rs1991186	0.83[ASN][1000 genomes]
rs1991187	0.94[ASN][1000 genomes]
rs1991188	0.83[ASN][1000 genomes]
rs2033010	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2033016	0.82[ASN][1000 genomes]
rs2033017	0.83[ASN][1000 genomes]
rs2033018	0.80[ASN][1000 genomes]
rs2081426	0.82[ASN][1000 genomes]
rs2112026	0.88[ASN][1000 genomes]
rs2112027	0.88[ASN][1000 genomes]
rs2113863	0.86[EUR][1000 genomes]
rs2162025	0.82[EUR][1000 genomes]
rs2194799	0.85[ASN][1000 genomes]
rs2216972	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2870065	0.82[ASN][1000 genomes]
rs4395277	0.83[ASN][1000 genomes]
rs4521082	0.82[ASN][1000 genomes]
rs4671282	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4671286	0.82[ASN][1000 genomes]
rs4672123	0.86[EUR][1000 genomes]
rs4672130	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4672131	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4672136	0.83[ASN][1000 genomes]
rs4672138	0.83[ASN][1000 genomes]
rs4672139	0.83[ASN][1000 genomes]
rs4672140	0.82[ASN][1000 genomes]
rs55786755	0.90[ASN][1000 genomes]
rs55788501	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55884811	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56125384	0.90[ASN][1000 genomes]
rs56322943	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57190241	0.83[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs57624751	0.90[ASN][1000 genomes]
rs58139318	0.90[ASN][1000 genomes]
rs58711470	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60442457	0.90[ASN][1000 genomes]
rs60639564	0.88[ASN][1000 genomes]
rs62160711	0.80[ASN][1000 genomes]
rs62160712	0.80[ASN][1000 genomes]
rs62160713	0.91[ASN][1000 genomes]
rs62160717	0.90[ASN][1000 genomes]
rs62160718	0.90[ASN][1000 genomes]
rs62161433	0.88[ASN][1000 genomes]
rs62161435	0.86[ASN][1000 genomes]
rs62161436	0.86[ASN][1000 genomes]
rs62161637	0.82[EUR][1000 genomes]
rs62162925	0.84[ASN][1000 genomes]
rs66532230	0.88[ASN][1000 genomes]
rs6731016	0.88[ASN][1000 genomes]
rs6731142	0.88[ASN][1000 genomes]
rs67395716	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6745039	0.90[ASN][1000 genomes]
rs68044837	0.88[ASN][1000 genomes]
rs68152617	0.88[ASN][1000 genomes]
rs7564301	0.91[ASN][1000 genomes]
rs7564662	0.80[ASN][1000 genomes]
rs7568508	0.94[ASN][1000 genomes]
rs7571779	0.80[ASN][1000 genomes]
rs7580218	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7592116	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7605708	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9309284	0.83[ASN][1000 genomes]
rs9309285	0.83[ASN][1000 genomes]
rs987576	0.88[EUR][1000 genomes]
rs989729	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874172	chr2:56638856-56811749	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757800	chr2:56659685-56851198	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759052	chr2:56659685-56851198	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2752438	chr2:56700945-56788111	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv874174	chr2:56702495-56761998	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv582049	chr2:56702495-56787100	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv582050	chr2:56702495-56854346	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv2756921	chr2:56706672-56811290	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv582051	chr2:56706758-56902709	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv874175	chr2:56731966-56821883	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv874176	chr2:56736097-56821883	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv874177	chr2:56739650-56821883	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv874178	chr2:56739650-56839139	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	esv35146	chr2:56741749-56811290	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv817973	chr2:56743435-56817927	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv1005729	chr2:56750209-56778009	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv1005547	chr2:56751574-56887287	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv1012596	chr2:56761303-56916336	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv535725	chr2:56761303-56916336	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56758800-56762400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr2:56759000-56762200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr2:56760400-56762400	Enhancers	HSMM	muscle
4	chr2:56761000-56762000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:56761000-56762200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:56761200-56762000	Enhancers	HSMMtube	muscle
7	chr2:56761800-56762200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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