Variant report

Variant	rs62162925
Chromosome Location	chr5:98082170-98082171
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11125634	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11125635	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1156672	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13418332	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17039629	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17048168	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17048169	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17048170	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17048179	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17048181	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17048231	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1991187	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2112026	0.81[ASN][1000 genomes]
rs2112027	0.81[ASN][1000 genomes]
rs4671282	0.84[ASN][1000 genomes]
rs4672129	0.84[ASN][1000 genomes]
rs4672130	0.84[ASN][1000 genomes]
rs4672131	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55786755	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55884811	0.81[ASN][1000 genomes]
rs56125384	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56322943	0.81[ASN][1000 genomes]
rs57190241	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57624751	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58139318	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58711470	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60442457	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60639564	0.81[ASN][1000 genomes]
rs62160713	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62160717	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62160718	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62161433	0.81[ASN][1000 genomes]
rs66532230	0.81[ASN][1000 genomes]
rs6745039	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs68044837	0.81[ASN][1000 genomes]
rs68152617	0.81[ASN][1000 genomes]
rs7564301	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7568508	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7592116	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7605708	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032060	chr5:98022226-98093492	Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv537817	chr5:98022226-98093492	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882414	chr5:98063710-98193164	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98076800-98090600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:98079000-98082400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:98081400-98082200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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