Variant report

Variant	rs4676767
Chromosome Location	chr3:119880266-119880267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:119816323..119819155-chr3:119879849..119882520,2	MCF-7	breast:
2	chr3:119878912..119881945-chr3:119899697..119902370,3	MCF-7	breast:
3	chr3:119872156..119875063-chr3:119876468..119880752,4	MCF-7	breast:
4	chr3:119879142..119881480-chr3:119885848..119888163,2	MCF-7	breast:
5	chr3:119811552..119816110-chr3:119876873..119880386,8	MCF-7	breast:
6	chr3:119879846..119883232-chr3:119884933..119889018,3	K562	blood:
7	chr3:119880098..119883232-chr3:119884308..119887648,3	K562	blood:
8	chr3:119865137..119868181-chr3:119877404..119880372,3	MCF-7	breast:
9	chr3:119874448..119876522-chr3:119878806..119880321,2	MCF-7	breast:
10	chr3:119812524..119815234-chr3:119878951..119881345,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000082701	Chromatin interaction
ENSG00000242622	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2046953	1.00[AMR][1000 genomes]
rs6782613	1.00[AMR][1000 genomes]
rs6803669	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs902795	0.82[YRI][hapmap]
rs902796	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv829697	chr3:119802856-119918435	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
5	nsv877376	chr3:119824037-120119446	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv3967	chr3:119857708-119903115	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	nsv1013788	chr3:119866722-119912297	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119875200-119896000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:119876000-119881400	Enhancers	Placenta	Placenta
3	chr3:119877600-119881600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:119877600-119881600	Enhancers	HMEC	breast
5	chr3:119877600-119881600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr3:119877600-119882600	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr3:119877800-119880400	Enhancers	NHEK	skin
8	chr3:119877800-119881600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:119878400-119880600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:119879000-119882000	Enhancers	HepG2	liver
11	chr3:119879200-119880400	Weak transcription	Fetal Intestine Large	intestine
12	chr3:119879200-119881200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr3:119879200-119881400	Weak transcription	NH-A	brain
14	chr3:119879400-119881400	Weak transcription	HSMMtube	muscle
15	chr3:119879400-119882400	Enhancers	Hela-S3	cervix
16	chr3:119879400-119882600	Weak transcription	Colon Smooth Muscle	Colon
17	chr3:119879400-119886000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr3:119879400-119886000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:119879600-119880400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:119879600-119881000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:119879600-119881000	Weak transcription	Fetal Intestine Small	intestine
22	chr3:119879600-119882600	Weak transcription	Adipose Nuclei	Adipose
23	chr3:119879600-119883000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr3:119879800-119881200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr3:119880000-119880400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:119880000-119881200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr3:119880000-119881400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:119880000-119881800	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr3:119880000-119888600	Weak transcription	A549	lung
30	chr3:119880200-119880600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr3:119880200-119880600	Weak transcription	NHDF-Ad	bronchial

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