Variant report

Variant	rs4678361
Chromosome Location	chr3:135833005-135833006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1154988	0.83[EUR][1000 genomes]
rs34330586	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34894639	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4431046	0.81[EUR][1000 genomes]
rs4678322	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61791721	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61791757	0.86[EUR][1000 genomes]
rs645040	0.84[EUR][1000 genomes]
rs6779146	0.87[EUR][1000 genomes]
rs687339	0.82[EUR][1000 genomes]
rs9840812	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9865841	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135803400-135848000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:135803600-135860600	Weak transcription	Esophagus	oesophagus
3	chr3:135803800-135860000	Weak transcription	NHLF	lung
4	chr3:135804000-135833200	Weak transcription	HMEC	breast
5	chr3:135805400-135843800	Weak transcription	NHEK	skin
6	chr3:135807400-135833200	Weak transcription	Lung	lung
7	chr3:135810200-135835600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:135810200-135835800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:135810400-135842200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:135810400-135843000	Weak transcription	Gastric	stomach
11	chr3:135810400-135848000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:135810400-135855400	Weak transcription	Osteobl	bone
13	chr3:135810400-135859800	Weak transcription	NHDF-Ad	bronchial
14	chr3:135810400-135861000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr3:135820200-135834400	Strong transcription	Skeletal Muscle Female	skeletal muscle
16	chr3:135822000-135861000	Weak transcription	Ovary	ovary
17	chr3:135822800-135870000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr3:135823200-135868400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr3:135824200-135834600	Weak transcription	Adipose Nuclei	Adipose
20	chr3:135824400-135845000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr3:135824400-135854400	Weak transcription	Pancreas	Pancrea
22	chr3:135825200-135846800	Weak transcription	Colon Smooth Muscle	Colon
23	chr3:135825400-135845800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr3:135826000-135833800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:135829000-135833600	Weak transcription	Placenta	Placenta
26	chr3:135829200-135844600	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr3:135829400-135838600	Weak transcription	Brain Hippocampus Middle	brain
28	chr3:135829600-135845600	Weak transcription	Brain Substantia Nigra	brain
29	chr3:135829600-135846800	Weak transcription	Brain Anterior Caudate	brain
30	chr3:135829800-135834200	Strong transcription	Skeletal Muscle Male	skeletal muscle
31	chr3:135830000-135833200	Weak transcription	Dnd41	blood
32	chr3:135830000-135845000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:135830600-135833600	Strong transcription	Stomach Smooth Muscle	stomach
34	chr3:135830600-135834000	Strong transcription	Fetal Muscle Leg	muscle
35	chr3:135830600-135834800	Strong transcription	Left Ventricle	heart
36	chr3:135831000-135834400	Strong transcription	Fetal Muscle Trunk	muscle
37	chr3:135831400-135834000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr3:135831400-135834000	ZNF genes & repeats	Brain Germinal Matrix	brain
39	chr3:135831400-135834400	ZNF genes & repeats	Fetal Brain Female	brain
40	chr3:135831400-135869400	Weak transcription	Psoas Muscle	Psoas
41	chr3:135831400-135874800	Weak transcription	Fetal Brain Male	brain
42	chr3:135831600-135833800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr3:135831600-135834000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr3:135831600-135834000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr3:135831600-135834000	ZNF genes & repeats	Fetal Stomach	stomach
46	chr3:135831800-135833800	ZNF genes & repeats	Fetal Intestine Large	intestine
47	chr3:135831800-135859800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:135832000-135833600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr3:135832000-135833800	Strong transcription	Fetal Lung	lung
50	chr3:135832000-135834200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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