Variant report

Variant	rs61791757
Chromosome Location	chr3:135905325-135905326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:135898599..135901770-chr3:135904262..135906651,3	K562	blood:
2	chr3:135898194..135901174-chr3:135905151..135906839,2	K562	blood:
3	chr3:135902782..135906527-chr3:135906678..135909399,3	MCF-7	breast:
4	chr3:135904444..135906124-chr3:135910756..135912454,2	MCF-7	breast:
5	chr3:135903155..135906744-chr3:135912511..135916464,6	MCF-7	breast:
6	chr3:135807631..135809142-chr3:135904444..135906997,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174579	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1153871	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1154988	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1278719	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34330586	0.84[EUR][1000 genomes]
rs34894639	0.83[EUR][1000 genomes]
rs4678322	0.85[EUR][1000 genomes]
rs4678361	0.86[EUR][1000 genomes]
rs534944	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61791721	0.87[EUR][1000 genomes]
rs645040	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6779146	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs684773	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs687339	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9840812	0.87[EUR][1000 genomes]
rs9865841	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135880000-135906600	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr3:135889400-135907000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr3:135889400-135910400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr3:135890400-135909600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr3:135893600-135910400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:135894400-135906800	Weak transcription	Esophagus	oesophagus
7	chr3:135895400-135907000	Weak transcription	Fetal Brain Male	brain
8	chr3:135897400-135907600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr3:135897400-135909800	Enhancers	Primary T cells fromperipheralblood	blood
10	chr3:135897600-135909000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:135897600-135911000	Enhancers	Primary B cells from peripheral blood	blood
12	chr3:135898000-135910200	Weak transcription	HSMM	muscle
13	chr3:135898400-135909200	Weak transcription	Aorta	Aorta
14	chr3:135898800-135907000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:135900800-135910400	Enhancers	Liver	Liver
16	chr3:135901000-135910400	Enhancers	HepG2	liver
17	chr3:135901200-135906600	Enhancers	Dnd41	blood
18	chr3:135901600-135908600	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr3:135901800-135905400	Weak transcription	Brain Germinal Matrix	brain
20	chr3:135901800-135906800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr3:135901800-135906800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr3:135901800-135906800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:135901800-135907200	Weak transcription	Fetal Brain Female	brain
24	chr3:135902000-135905800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr3:135902000-135906600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr3:135902000-135906600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr3:135902000-135906600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr3:135902000-135906800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr3:135902200-135906000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr3:135902200-135906400	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr3:135902400-135906600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr3:135902600-135906200	Enhancers	Adipose Nuclei	Adipose
33	chr3:135902800-135907000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr3:135903000-135906800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr3:135903400-135911200	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr3:135903600-135906200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:135904200-135907800	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr3:135904400-135905400	Enhancers	Fetal Muscle Trunk	muscle
39	chr3:135904400-135905600	Enhancers	Psoas Muscle	Psoas
40	chr3:135904400-135907800	Enhancers	Left Ventricle	heart
41	chr3:135904400-135909800	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr3:135904400-135910400	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr3:135904600-135905800	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr3:135904600-135907800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr3:135904800-135905600	Enhancers	Hela-S3	cervix
46	chr3:135904800-135905800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
47	chr3:135904800-135906000	Enhancers	Pancreatic Islets	Pancreatic Islet
48	chr3:135904800-135906200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr3:135904800-135906200	Enhancers	Brain Anterior Caudate	brain
50	chr3:135904800-135906200	Enhancers	HUVEC	blood vessel

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