Variant report

Variant	rs1278719
Chromosome Location	chr3:135961569-135961570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:135956487..135958246-chr3:135959617..135962122,2	MCF-7	breast:
2	chr3:135914390..135916727-chr3:135961044..135964997,4	MCF-7	breast:
3	chr3:135960116..135965252-chr3:135965591..135969591,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174579	Chromatin interaction
ENSG00000114054	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1153870	0.93[ASN][1000 genomes]
rs1153871	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1153872	0.95[ASN][1000 genomes]
rs1154988	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1279425	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1279840	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3755636	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4678428	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs523118	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs534944	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs548288	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs576771	0.82[EUR][1000 genomes]
rs606725	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61789601	0.83[EUR][1000 genomes]
rs61791757	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs632016	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs645040	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs650505	0.83[ASN][1000 genomes]
rs665200	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6779146	0.81[EUR][1000 genomes]
rs684773	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs687339	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72493178	0.85[ASN][1000 genomes]
rs73222262	0.83[ASN][1000 genomes]
rs7628146	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs866782	0.81[EUR][1000 genomes]
rs895893	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv508246	chr3:135922023-136038622	Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135957800-135966200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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