Variant report

Variant	rs61789601
Chromosome Location	chr3:135954979-135954980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1153871	0.86[EUR][1000 genomes]
rs1278719	0.83[EUR][1000 genomes]
rs13059045	1.00[ASN][1000 genomes]
rs17252498	0.85[EUR][1000 genomes]
rs3755636	0.80[EUR][1000 genomes]
rs3821445	0.89[EUR][1000 genomes]
rs489398	0.89[EUR][1000 genomes]
rs523118	0.82[EUR][1000 genomes]
rs534944	0.84[EUR][1000 genomes]
rs610860	0.85[EUR][1000 genomes]
rs61789561	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs684773	0.86[EUR][1000 genomes]
rs696517	0.85[EUR][1000 genomes]
rs866782	0.93[EUR][1000 genomes]
rs9647335	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv508246	chr3:135922023-136038622	Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2760738	chr3:135943988-135957333	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135953800-135955400	Enhancers	Liver	Liver
2	chr3:135954400-135955400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:135954600-135955000	Enhancers	H9 Cell Line	embryonic stem cell
4	chr3:135954600-135955000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr3:135954600-135955000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:135954600-135955200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr3:135954600-135955200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:135954600-135955400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr3:135954600-135956000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr3:135954600-135958400	Enhancers	HepG2	liver
11	chr3:135954800-135955000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr3:135954800-135955800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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