Variant report

Variant	rs9647335
Chromosome Location	chr3:135880410-135880411
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:135879587..135883583-chr3:135913683..135917123,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174579	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs35087366	1.00[ASN][1000 genomes]
rs61789561	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61789601	0.81[EUR][1000 genomes]
rs9865841	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv877518	chr3:135861666-135885554	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv967232	chr3:135871526-135887926	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135862000-135904800	Weak transcription	Hela-S3	cervix
2	chr3:135864200-135882400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:135864400-135882600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:135864400-135885200	Weak transcription	Brain Germinal Matrix	brain
5	chr3:135865600-135882400	Weak transcription	Fetal Heart	heart
6	chr3:135868800-135883000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:135869800-135882400	Weak transcription	Brain Angular Gyrus	brain
8	chr3:135870400-135881000	Weak transcription	Right Atrium	heart
9	chr3:135870800-135895200	Weak transcription	Fetal Intestine Small	intestine
10	chr3:135871000-135881800	Weak transcription	Right Ventricle	heart
11	chr3:135871000-135882400	Weak transcription	Esophagus	oesophagus
12	chr3:135871000-135882400	Weak transcription	Small Intestine	intestine
13	chr3:135871000-135897600	Weak transcription	Aorta	Aorta
14	chr3:135871200-135882200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr3:135871200-135905000	Weak transcription	Fetal Stomach	stomach
16	chr3:135871400-135882200	Weak transcription	HUVEC	blood vessel
17	chr3:135871400-135882400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:135871400-135885000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr3:135871400-135885000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr3:135871400-135885600	Weak transcription	Fetal Kidney	kidney
21	chr3:135871600-135880800	Weak transcription	Psoas Muscle	Psoas
22	chr3:135871600-135881800	Weak transcription	Brain Substantia Nigra	brain
23	chr3:135871600-135882200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:135871600-135882400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr3:135871600-135882400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:135871600-135882400	Weak transcription	Fetal Muscle Leg	muscle
27	chr3:135871600-135883000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr3:135871600-135884800	Weak transcription	K562	blood
29	chr3:135871600-135885000	Weak transcription	Primary hematopoietic stem cells	blood
30	chr3:135871800-135882200	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr3:135872000-135882200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr3:135872000-135882200	Weak transcription	Primary B cells from cord blood	blood
33	chr3:135872000-135882200	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr3:135872000-135882400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr3:135872000-135882400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr3:135872000-135882400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr3:135872000-135882400	Weak transcription	Fetal Lung	lung
38	chr3:135872000-135885000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr3:135872000-135887800	Weak transcription	HSMM	muscle
40	chr3:135872200-135881200	Weak transcription	Fetal Thymus	thymus
41	chr3:135872200-135882200	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr3:135872200-135891400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr3:135872600-135882200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr3:135872600-135882200	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr3:135872800-135885400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr3:135872800-135903600	Weak transcription	Thymus	Thymus
47	chr3:135873600-135881800	Weak transcription	Liver	Liver
48	chr3:135873600-135882400	Weak transcription	Colon Smooth Muscle	Colon
49	chr3:135873600-135889800	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr3:135874400-135887400	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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