Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:135916249..135918777-chr3:135964014..135966844,3	K562	blood:
2	chr3:135912324..135920790-chr3:135965276..135971841,24	K562	blood:

Variant related genes	Relation type
ENSG00000174579	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1153870	0.87[ASN][1000 genomes]
rs1153871	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1153872	0.88[ASN][1000 genomes]
rs1154988	0.85[EUR][1000 genomes]
rs1278719	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1279425	0.81[EUR][1000 genomes]
rs1279840	0.81[EUR][1000 genomes]
rs3755636	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4678428	0.82[EUR][1000 genomes]
rs534944	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs548288	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs576771	0.82[EUR][1000 genomes]
rs606725	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61789601	0.82[EUR][1000 genomes]
rs632016	0.88[EUR][1000 genomes]
rs645040	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs665200	0.82[EUR][1000 genomes]
rs6779146	0.81[EUR][1000 genomes]
rs684773	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs687339	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7628146	0.82[EUR][1000 genomes]
rs866782	0.81[EUR][1000 genomes]
rs895893	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv508246	chr3:135922023-136038622	Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135957800-135966200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:135965000-135966000	Weak transcription	HepG2	liver
3	chr3:135965000-135968000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:135965000-135968600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:135965000-135968600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:135965000-135968800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search: