Variant report

Variant	rs895893
Chromosome Location	chr3:135955604-135955605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1153870	0.88[ASN][1000 genomes]
rs1153871	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1153872	0.89[ASN][1000 genomes]
rs1154988	0.80[AMR][1000 genomes]
rs1278719	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3755636	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs523118	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs534944	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs548288	0.84[ASN][1000 genomes]
rs606725	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs632016	0.81[ASN][1000 genomes]
rs645040	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs684773	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs687339	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7628146	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv508246	chr3:135922023-136038622	Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2760738	chr3:135943988-135957333	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135954600-135956000	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr3:135954600-135958400	Enhancers	HepG2	liver
3	chr3:135954800-135955800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:135955000-135956600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:135955000-135956600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:135955200-135956400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:135955400-135955800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:135955400-135956000	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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