Variant report

Variant	rs73222262
Chromosome Location	chr3:135982417-135982418
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:135967759..135970710-chr3:135979580..135983206,3	K562	blood:
2	chr3:135914799..135916936-chr3:135981724..135984438,2	MCF-7	breast:
3	chr3:135978278..135980985-chr3:135981419..135984016,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174579	Chromatin interaction
ENSG00000114054	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1153871	0.83[ASN][1000 genomes]
rs12163608	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12330635	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1278719	0.83[ASN][1000 genomes]
rs1279425	0.84[ASN][1000 genomes]
rs1279840	0.84[ASN][1000 genomes]
rs1291921	0.83[ASN][1000 genomes]
rs1618069	0.84[ASN][1000 genomes]
rs1711171	0.84[ASN][1000 genomes]
rs3755636	0.92[ASN][1000 genomes]
rs4678428	0.87[ASN][1000 genomes]
rs483465	0.84[ASN][1000 genomes]
rs534944	0.83[ASN][1000 genomes]
rs548288	0.92[ASN][1000 genomes]
rs576771	0.82[ASN][1000 genomes]
rs606725	0.89[ASN][1000 genomes]
rs61789645	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs61789646	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61789652	0.93[AMR][1000 genomes]
rs632016	0.88[ASN][1000 genomes]
rs650505	0.86[ASN][1000 genomes]
rs665200	0.87[ASN][1000 genomes]
rs667920	0.81[ASN][1000 genomes]
rs6770476	0.85[ASN][1000 genomes]
rs684773	0.83[ASN][1000 genomes]
rs72493178	0.99[ASN][1000 genomes]
rs7628146	0.87[ASN][1000 genomes]
rs9809427	0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9832813	0.85[ASN][1000 genomes]
rs9835523	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs9845396	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9848883	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9851986	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs9854328	0.80[ASN][1000 genomes]
rs9856769	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9869720	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv508246	chr3:135922023-136038622	Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135970200-135984000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:135970200-135996000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:135970400-135995400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:135970600-135985200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:135970600-135985200	Weak transcription	HMEC	breast
6	chr3:135970600-135987600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:135970600-135998800	Weak transcription	Fetal Brain Male	brain
8	chr3:135970600-135999200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:135970600-135999200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr3:135970600-136039400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:135970800-135986000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr3:135970800-135995400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:135970800-135998000	Weak transcription	Hela-S3	cervix
14	chr3:135973400-135984200	Strong transcription	Fetal Stomach	stomach
15	chr3:135974000-135983400	Strong transcription	Fetal Thymus	thymus
16	chr3:135974000-135986800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr3:135974000-135986800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:135974000-135989400	Strong transcription	Dnd41	blood
19	chr3:135974200-135982800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:135974200-135983200	Strong transcription	Stomach Smooth Muscle	stomach
21	chr3:135974200-135983400	Strong transcription	Fetal Muscle Leg	muscle
22	chr3:135974200-135989600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr3:135974200-135989600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr3:135974400-135982600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr3:135974400-135983000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:135974400-135983000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr3:135974400-135983200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr3:135974400-135983600	Strong transcription	Fetal Muscle Trunk	muscle
29	chr3:135974400-135984600	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr3:135974400-135984600	Strong transcription	Liver	Liver
31	chr3:135974400-135986400	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr3:135974400-135989600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr3:135974600-135982800	Strong transcription	Left Ventricle	heart
34	chr3:135974600-135983000	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr3:135974600-135983400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:135974600-135985200	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr3:135974600-135986400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr3:135974800-135982800	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr3:135974800-135983400	Strong transcription	Skeletal Muscle Female	skeletal muscle
40	chr3:135974800-135986200	Strong transcription	Placenta	Placenta
41	chr3:135974800-135997800	Weak transcription	Stomach Mucosa	stomach
42	chr3:135975000-135983200	Strong transcription	Adipose Nuclei	Adipose
43	chr3:135975000-135983400	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr3:135975000-135984600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr3:135975200-135983600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr3:135975200-135985200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr3:135975200-135987800	Strong transcription	Fetal Intestine Large	intestine
48	chr3:135975800-135987200	Weak transcription	Thymus	Thymus
49	chr3:135976200-135996000	Weak transcription	Pancreas	Pancrea
50	chr3:135976200-135999400	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links