Variant report

Variant	rs9832813
Chromosome Location	chr3:136065565-136065566
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136048349..136049959-chr3:136063905..136066760,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1145106	1.00[CHB][hapmap];0.87[CHD][hapmap];0.81[ASN][1000 genomes]
rs11715257	0.89[CHB][hapmap]
rs12330258	0.93[ASN][1000 genomes]
rs12330635	0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1279425	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs1279840	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs1291921	0.82[ASN][1000 genomes]
rs13321721	0.83[GIH][hapmap];0.92[MEX][hapmap]
rs13326151	0.92[MEX][hapmap]
rs1394092	1.00[CHB][hapmap]
rs1618069	0.83[ASN][1000 genomes]
rs1711161	0.90[CHB][hapmap]
rs1711171	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs17364492	0.83[GIH][hapmap];0.92[MEX][hapmap]
rs2655008	0.89[CHB][hapmap]
rs28634226	0.83[GIH][hapmap];0.92[MEX][hapmap]
rs34135127	0.92[MEX][hapmap]
rs34757183	0.83[GIH][hapmap];0.92[MEX][hapmap]
rs34913797	0.83[GIH][hapmap];0.84[MEX][hapmap]
rs35320690	0.81[LWK][hapmap];0.92[MKK][hapmap]
rs3755636	0.89[CHB][hapmap];0.80[ASN][1000 genomes]
rs4678428	0.89[CHB][hapmap];0.82[CHD][hapmap];0.80[ASN][1000 genomes]
rs483465	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs548288	0.89[CHB][hapmap];0.80[ASN][1000 genomes]
rs553018	0.86[JPT][hapmap]
rs571513	1.00[CHB][hapmap];0.83[CHD][hapmap];0.81[ASN][1000 genomes]
rs606725	0.89[CHB][hapmap]
rs61789645	0.82[ASN][1000 genomes]
rs61789646	0.82[ASN][1000 genomes]
rs655720	0.81[ASN][1000 genomes]
rs665200	0.80[ASN][1000 genomes]
rs667920	1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[ASN][1000 genomes]
rs6768743	0.83[GIH][hapmap];0.86[LWK][hapmap];0.92[MEX][hapmap]
rs6770476	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6786582	0.81[LWK][hapmap];0.81[MKK][hapmap]
rs695983	1.00[CHB][hapmap];0.84[CHD][hapmap];0.86[ASN][1000 genomes]
rs696516	0.90[CHB][hapmap];0.88[CHD][hapmap];0.85[ASN][1000 genomes]
rs698270	1.00[CHB][hapmap];0.83[CHD][hapmap];0.84[ASN][1000 genomes]
rs699165	0.89[CHB][hapmap];0.87[CHD][hapmap]
rs72493178	0.86[ASN][1000 genomes]
rs73222262	0.85[ASN][1000 genomes]
rs7620314	0.92[JPT][hapmap]
rs7628146	0.80[ASN][1000 genomes]
rs833752	0.89[CHB][hapmap]
rs900048	1.00[CHB][hapmap]
rs9289511	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9809427	0.93[ASN][1000 genomes]
rs9812579	0.83[GIH][hapmap];0.92[MEX][hapmap]
rs9813691	0.83[GIH][hapmap];0.92[MEX][hapmap]
rs9820485	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9823373	0.92[MEX][hapmap]
rs9832056	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9832556	0.89[ASN][1000 genomes]
rs9835523	0.82[ASN][1000 genomes]
rs9837158	0.83[GIH][hapmap];0.92[MEX][hapmap];0.83[YRI][hapmap]
rs9844666	0.83[GIH][hapmap];0.92[MEX][hapmap]
rs9845396	0.82[ASN][1000 genomes]
rs9848883	0.89[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9851986	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9854084	1.00[CHB][hapmap]
rs9854328	0.95[ASN][1000 genomes]
rs9856769	0.89[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9869720	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9878078	0.92[MEX][hapmap]
rs9880211	0.83[GIH][hapmap];0.92[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv4025	chr3:136017458-136065622	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv877519	chr3:136035737-136279390	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv877520	chr3:136056861-136310985	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136039000-136072400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:136042400-136078800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr3:136042600-136072600	Strong transcription	Dnd41	blood
4	chr3:136043400-136098600	Weak transcription	Fetal Brain Male	brain
5	chr3:136043600-136082000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:136043800-136070400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:136045600-136079200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr3:136047600-136098000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr3:136047800-136068200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr3:136047800-136074800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr3:136051000-136069800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr3:136051600-136069200	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr3:136051600-136070800	Strong transcription	Fetal Muscle Trunk	muscle
14	chr3:136052200-136069200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:136052800-136070800	Strong transcription	Primary B cells from peripheral blood	blood
16	chr3:136053000-136066400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr3:136053000-136072400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr3:136053800-136069000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr3:136054200-136085400	Weak transcription	Brain Hippocampus Middle	brain
20	chr3:136054600-136074200	Weak transcription	Brain Angular Gyrus	brain
21	chr3:136054600-136172000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr3:136054800-136076600	Weak transcription	Brain Substantia Nigra	brain
23	chr3:136055400-136069000	Weak transcription	Aorta	Aorta
24	chr3:136055600-136073400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr3:136055600-136100800	Weak transcription	Spleen	Spleen
26	chr3:136057800-136069800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr3:136058400-136065600	Strong transcription	Fetal Lung	lung
28	chr3:136059000-136067600	Weak transcription	Fetal Kidney	kidney
29	chr3:136059000-136072000	Weak transcription	GM12878-XiMat	blood
30	chr3:136059200-136069200	Weak transcription	Psoas Muscle	Psoas
31	chr3:136059400-136066400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr3:136059600-136070400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr3:136059600-136079000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr3:136059800-136066400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr3:136060000-136067600	Weak transcription	Brain Anterior Caudate	brain
36	chr3:136060400-136069200	Weak transcription	Right Ventricle	heart
37	chr3:136060800-136067200	Weak transcription	Liver	Liver
38	chr3:136061800-136074200	Weak transcription	Brain Germinal Matrix	brain
39	chr3:136062400-136066600	Weak transcription	Placenta	Placenta
40	chr3:136062400-136067400	Weak transcription	Duodenum Mucosa	Duodenum
41	chr3:136063000-136067400	Weak transcription	Ovary	ovary
42	chr3:136063200-136071000	Weak transcription	Fetal Brain Female	brain
43	chr3:136063200-136072200	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr3:136063400-136066600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr3:136063400-136066600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr3:136063400-136066600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr3:136063400-136066800	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr3:136063400-136066800	Weak transcription	HUVEC	blood vessel
49	chr3:136063400-136067200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr3:136063400-136067200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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