Variant report

Variant	rs4680230
Chromosome Location	chr3:155748694-155748695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11706897	0.91[ASN][1000 genomes]
rs11714137	0.99[EUR][1000 genomes]
rs11719280	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34533513	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6776718	0.80[EUR][1000 genomes]
rs6806030	0.83[EUR][1000 genomes]
rs6806441	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71310459	0.95[EUR][1000 genomes]
rs7643130	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs883670	0.82[EUR][1000 genomes]
rs9875491	0.91[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4680230	SCARNA7	cis	cerebellum	SCAN
rs4680230	SLC33A1	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155748200-155749000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:155748600-155749000	Enhancers	H1 Cell Line	embryonic stem cell
3	chr3:155748600-155749000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:155748600-155749000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:155748600-155749200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr3:155748600-155749400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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