Variant report

Variant	rs71310459
Chromosome Location	chr3:155755827-155755828
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11714137	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11719280	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1817698	0.81[ASN][1000 genomes]
rs1850283	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34533513	0.94[EUR][1000 genomes]
rs4680230	0.95[EUR][1000 genomes]
rs6441032	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6776718	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6806030	0.87[EUR][1000 genomes]
rs6806441	0.97[EUR][1000 genomes]
rs7643130	0.99[EUR][1000 genomes]
rs883670	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592084	chr3:155751484-155830578	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv521239	chr3:155755327-155762725	Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155754200-155758200	Enhancers	Brain Hippocampus Middle	brain
2	chr3:155754800-155758000	Weak transcription	Brain Angular Gyrus	brain
3	chr3:155754800-155758000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:155755200-155756800	Weak transcription	Brain Substantia Nigra	brain
5	chr3:155755600-155756800	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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