Variant report

Variant	rs1817698
Chromosome Location	chr3:155788842-155788843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10936023	0.84[CEU][hapmap]
rs11706897	0.83[EUR][1000 genomes]
rs1850283	0.99[ASN][1000 genomes]
rs2087271	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6441029	0.90[EUR][1000 genomes]
rs6441030	0.90[EUR][1000 genomes]
rs6441031	0.90[EUR][1000 genomes]
rs6441032	0.94[ASN][1000 genomes]
rs6776718	0.84[ASN][1000 genomes]
rs6810368	0.90[EUR][1000 genomes]
rs71310459	0.81[ASN][1000 genomes]
rs883670	0.84[ASN][1000 genomes]
rs901862	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9810320	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs9875491	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592084	chr3:155751484-155830578	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155788400-155789000	Enhancers	Muscle Satellite Cultured Cells	--
2	chr3:155788600-155789000	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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