Variant report

Variant	rs901862
Chromosome Location	chr3:155769380-155769381
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10936023	0.92[CEU][hapmap];0.98[GIH][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs11706897	0.86[EUR][1000 genomes]
rs1817698	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2087271	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6441029	0.94[EUR][1000 genomes]
rs6441030	0.94[EUR][1000 genomes]
rs6441031	0.94[EUR][1000 genomes]
rs6810368	0.94[EUR][1000 genomes]
rs9810320	0.83[ASW][hapmap];0.92[CEU][hapmap];0.89[GIH][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs9822881	0.81[YRI][hapmap]
rs9875491	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592084	chr3:155751484-155830578	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs901862	OTOL1	cis	parietal	SCAN
rs901862	KPNA4	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155762600-155769400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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