Variant report

Variant	rs9810320
Chromosome Location	chr3:155755221-155755222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10936023	0.84[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11706897	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1817698	0.87[EUR][1000 genomes]
rs2087271	0.92[EUR][1000 genomes]
rs6441029	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441030	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441031	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6810368	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs901862	0.91[EUR][1000 genomes]
rs9875491	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592084	chr3:155751484-155830578	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9810320	OTOL1	cis	parietal	SCAN
rs9810320	KPNA4	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155754200-155758200	Enhancers	Brain Hippocampus Middle	brain
2	chr3:155754400-155755400	Enhancers	Brain Cingulate Gyrus	brain
3	chr3:155754400-155755600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:155754400-155755600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:155754400-155755600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr3:155754600-155755600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:155754800-155758000	Weak transcription	Brain Angular Gyrus	brain
8	chr3:155754800-155758000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:155755000-155755600	Active TSS	Brain Anterior Caudate	brain
10	chr3:155755200-155756800	Weak transcription	Brain Substantia Nigra	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links