Variant report

Variant	rs4680314
Chromosome Location	chr3:156628312-156628313
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11712111	0.80[ASN][1000 genomes]
rs11914959	0.91[EUR][1000 genomes]
rs12629380	0.82[ASN][1000 genomes]
rs12638253	0.83[ASN][1000 genomes]
rs13070271	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1320011	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1574980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17382070	0.82[ASN][1000 genomes]
rs2321291	0.90[EUR][1000 genomes]
rs2321292	0.80[ASN][1000 genomes]
rs2321293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2874488	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs344073	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344079	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs344080	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs344082	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs344084	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs344087	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs416600	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4356776	0.83[AMR][1000 genomes]
rs4458324	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs453219	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4680311	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4680312	0.80[ASN][1000 genomes]
rs4680313	0.95[EUR][1000 genomes]
rs6441101	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6762708	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6765353	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6780475	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6783162	0.90[EUR][1000 genomes]
rs7622309	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7637701	0.81[ASN][1000 genomes]
rs7638330	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs873337	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9812895	0.81[ASN][1000 genomes]
rs9826073	0.91[EUR][1000 genomes]
rs9862338	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9863643	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9865905	0.81[ASN][1000 genomes]
rs9866373	0.84[ASN][1000 genomes]
rs9867621	0.82[ASN][1000 genomes]
rs9870137	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9871817	0.82[ASN][1000 genomes]
rs9876148	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9882009	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9883439	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829765	chr3:156568263-156718496	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv592120	chr3:156626091-156691604	Enhancers Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156627200-156628600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:156627600-156628600	Enhancers	NHEK	skin
3	chr3:156627800-156628400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:156627800-156628600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:156627800-156628600	Enhancers	HMEC	breast
6	chr3:156628000-156628400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr3:156628000-156628400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:156628000-156628600	Enhancers	H1 Cell Line	embryonic stem cell

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