Variant report

Variant	rs9862338
Chromosome Location	chr3:156666603-156666604
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11914959	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1320011	0.90[EUR][1000 genomes]
rs1574980	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2321291	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2321293	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2874488	0.86[EUR][1000 genomes]
rs344073	0.81[EUR][1000 genomes]
rs344079	0.83[EUR][1000 genomes]
rs344080	0.83[EUR][1000 genomes]
rs344082	0.83[EUR][1000 genomes]
rs344084	0.83[EUR][1000 genomes]
rs344087	0.83[EUR][1000 genomes]
rs416600	0.83[EUR][1000 genomes]
rs453219	0.85[EUR][1000 genomes]
rs4680311	0.86[EUR][1000 genomes]
rs4680313	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4680314	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6441101	0.86[EUR][1000 genomes]
rs6762708	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6765353	0.85[EUR][1000 genomes]
rs6780475	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6783162	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7622309	0.88[EUR][1000 genomes]
rs7638330	0.86[EUR][1000 genomes]
rs873337	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9826073	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9863643	0.86[EUR][1000 genomes]
rs9870137	0.86[EUR][1000 genomes]
rs9876148	0.86[EUR][1000 genomes]
rs9882009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9883439	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829765	chr3:156568263-156718496	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv592120	chr3:156626091-156691604	Enhancers Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9862338	LINC00886	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156666400-156667000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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