Variant report
| Variant | rs4680324 |
|---|---|
| Chromosome Location | chr3:156714282-156714283 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10804775 | 0.87[EUR][1000 genomes] |
| rs10804776 | 0.87[EUR][1000 genomes] |
| rs10936044 | 0.81[EUR][1000 genomes] |
| rs10936045 | 1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[EUR][1000 genomes] |
| rs10936046 | 0.85[EUR][1000 genomes] |
| rs10936047 | 0.90[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs10936049 | 0.87[EUR][1000 genomes] |
| rs10936050 | 0.87[EUR][1000 genomes] |
| rs10936051 | 0.87[EUR][1000 genomes] |
| rs10936052 | 0.87[EUR][1000 genomes] |
| rs10936053 | 0.87[EUR][1000 genomes] |
| rs10936056 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11710103 | 0.87[EUR][1000 genomes] |
| rs11920497 | 1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes] |
| rs11927587 | 0.87[EUR][1000 genomes] |
| rs11929637 | 0.87[EUR][1000 genomes] |
| rs12491332 | 0.87[EUR][1000 genomes] |
| rs12494440 | 0.90[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs12629618 | 0.90[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs12629809 | 0.87[EUR][1000 genomes] |
| rs1871967 | 0.90[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs2321457 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2321458 | 0.90[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs4680325 | 0.87[EUR][1000 genomes] |
| rs4680327 | 0.87[EUR][1000 genomes] |
| rs9822976 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829765 | chr3:156568263-156718496 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | esv3349885 | chr3:156685409-156878910 | Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 141 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:156705200-156717200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
