Variant report

Variant	rs4681208
Chromosome Location	chr3:150294226-150294227
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150293180..150296134-chr3:150298299..150300019,2	K562	blood:
2	chr3:150286408..150288421-chr3:150293206..150295691,2	K562	blood:
3	chr3:150267357..150269852-chr3:150293170..150295948,3	K562	blood:
4	chr16:84400012..84402548-chr3:150292795..150295222,2	MCF-7	breast:
5	chr3:150290177..150291697-chr3:150292047..150294562,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144895	Chromatin interaction
ENSG00000064270	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs3745	0.90[EUR][1000 genomes]
rs4681636	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62269086	0.88[EUR][1000 genomes]
rs62269087	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62269088	1.00[AFR][1000 genomes]
rs62269099	1.00[AFR][1000 genomes]
rs62269100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62269102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62283992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62283993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62283994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62284023	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62284024	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62284025	1.00[AFR][1000 genomes]
rs67548051	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6794400	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6802114	0.90[EUR][1000 genomes]
rs73169829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73169833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150265200-150299400	Weak transcription	Esophagus	oesophagus
2	chr3:150265200-150302800	Weak transcription	Gastric	stomach
3	chr3:150265400-150305800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:150265600-150304200	Weak transcription	Fetal Brain Male	brain
5	chr3:150265600-150320600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:150265600-150320600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:150266000-150304600	Weak transcription	Fetal Heart	heart
8	chr3:150266000-150307600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:150266400-150302200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:150268600-150304000	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr3:150274000-150303000	Weak transcription	Pancreas	Pancrea
12	chr3:150274800-150300600	Weak transcription	Stomach Mucosa	stomach
13	chr3:150277200-150305200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr3:150278000-150306800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:150278200-150304800	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr3:150278400-150306400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:150279400-150303800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:150280000-150304800	Strong transcription	Fetal Thymus	thymus
19	chr3:150280200-150304400	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr3:150280200-150304600	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr3:150280200-150304800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:150280200-150305000	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr3:150280200-150307800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:150280800-150300400	Strong transcription	Liver	Liver
25	chr3:150281400-150303800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:150282400-150295600	Strong transcription	Placenta	Placenta
27	chr3:150283200-150305200	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr3:150286600-150294400	Weak transcription	K562	blood
29	chr3:150286600-150305400	Weak transcription	Colonic Mucosa	Colon
30	chr3:150287600-150294400	Weak transcription	Fetal Kidney	kidney
31	chr3:150289200-150295400	Strong transcription	Osteobl	bone
32	chr3:150289400-150296600	Strong transcription	HSMM	muscle
33	chr3:150289600-150295200	Strong transcription	HepG2	liver
34	chr3:150289600-150303800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr3:150289800-150296800	Strong transcription	NH-A	brain
36	chr3:150289800-150303600	Strong transcription	Hela-S3	cervix
37	chr3:150289800-150304000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr3:150290400-150298400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr3:150291200-150295400	Strong transcription	Muscle Satellite Cultured Cells	--
40	chr3:150291600-150296600	Strong transcription	Primary B cells from peripheral blood	blood
41	chr3:150291600-150306200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr3:150291800-150295400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr3:150291800-150296600	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr3:150291800-150303000	Strong transcription	Primary B cells from cord blood	blood
45	chr3:150291800-150304000	Strong transcription	Dnd41	blood
46	chr3:150292000-150295000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr3:150292000-150295000	Strong transcription	HMEC	breast
48	chr3:150292000-150304800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr3:150292400-150299600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr3:150292400-150304000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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