Variant report

Variant	rs62269102
Chromosome Location	chr3:150282211-150282212
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr3:150282082-150282355	HepG2	liver:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:150273199..150278590-chr3:150279428..150284262,5	K562	blood:
2	chr3:150280671..150283551-chr3:150285124..150288569,3	K562	blood:
3	chr3:150280581..150282241-chr3:150393609..150396431,2	K562	blood:
4	chr3:150263824..150265623-chr3:150279033..150282712,3	K562	blood:
5	chr3:150277090..150279945-chr3:150281448..150284053,2	K562	blood:
6	chr3:150262880..150265535-chr3:150280417..150283149,2	K562	blood:

No data

Variant related genes	Relation type
EIF2A	TF binding region
ENSG00000144895	Chromatin interaction
ENSG00000120742	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs3745	0.90[EUR][1000 genomes]
rs4681208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4681636	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62269086	0.88[EUR][1000 genomes]
rs62269087	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62269088	1.00[AFR][1000 genomes]
rs62269099	1.00[AFR][1000 genomes]
rs62269100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62283992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62283993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62283994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62284023	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62284024	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62284025	1.00[AFR][1000 genomes]
rs67548051	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6794400	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6802114	0.90[EUR][1000 genomes]
rs73169829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73169833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150265200-150299400	Weak transcription	Esophagus	oesophagus
2	chr3:150265200-150302800	Weak transcription	Gastric	stomach
3	chr3:150265400-150305800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:150265600-150284600	Weak transcription	Right Ventricle	heart
5	chr3:150265600-150293400	Weak transcription	Aorta	Aorta
6	chr3:150265600-150294000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:150265600-150304200	Weak transcription	Fetal Brain Male	brain
8	chr3:150265600-150320600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:150265600-150320600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:150266000-150284400	Weak transcription	Brain Anterior Caudate	brain
11	chr3:150266000-150285000	Weak transcription	Colonic Mucosa	Colon
12	chr3:150266000-150304600	Weak transcription	Fetal Heart	heart
13	chr3:150266000-150307600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr3:150266400-150293400	Weak transcription	Psoas Muscle	Psoas
15	chr3:150266400-150302200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr3:150268200-150282800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr3:150268600-150304000	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr3:150269400-150284000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr3:150272400-150284600	Weak transcription	Brain Hippocampus Middle	brain
20	chr3:150272400-150293800	Weak transcription	Small Intestine	intestine
21	chr3:150272600-150283800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr3:150272800-150283000	Weak transcription	Colon Smooth Muscle	Colon
23	chr3:150272800-150283400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr3:150272800-150286400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr3:150272800-150290400	Strong transcription	Dnd41	blood
26	chr3:150273200-150282400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr3:150273600-150285400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr3:150273800-150282800	Weak transcription	Fetal Kidney	kidney
29	chr3:150273800-150283000	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr3:150274000-150282400	Weak transcription	Placenta	Placenta
31	chr3:150274000-150282400	Weak transcription	HMEC	breast
32	chr3:150274000-150283000	Weak transcription	Fetal Muscle Leg	muscle
33	chr3:150274000-150283400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr3:150274000-150283600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr3:150274000-150283800	Weak transcription	Stomach Smooth Muscle	stomach
36	chr3:150274000-150284400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr3:150274000-150284400	Weak transcription	Left Ventricle	heart
38	chr3:150274000-150284600	Weak transcription	Ovary	ovary
39	chr3:150274000-150284600	Weak transcription	HSMMtube	muscle
40	chr3:150274000-150284600	Weak transcription	NHEK	skin
41	chr3:150274000-150284600	Weak transcription	NHLF	lung
42	chr3:150274000-150286400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr3:150274000-150287400	Weak transcription	Brain Germinal Matrix	brain
44	chr3:150274000-150288200	Weak transcription	Lung	lung
45	chr3:150274000-150288200	Weak transcription	Spleen	Spleen
46	chr3:150274000-150288600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr3:150274000-150289600	Weak transcription	Thymus	Thymus
48	chr3:150274000-150293400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr3:150274000-150293600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr3:150274000-150303000	Weak transcription	Pancreas	Pancrea

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