Variant report

Variant	rs4682113
Chromosome Location	chr3:112385584-112385585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1154272	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1249913	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1398092	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs1488263	1.00[YRI][hapmap]
rs2705540	1.00[YRI][hapmap]
rs2931761	1.00[YRI][hapmap]
rs6809467	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7373716	1.00[AFR][1000 genomes]
rs7624745	1.00[AFR][1000 genomes]
rs820570	1.00[AFR][1000 genomes]
rs981180	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs981182	1.00[YRI][hapmap];0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112375000-112389000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:112385400-112385600	Flanking Active TSS	K562	blood
3	chr3:112385400-112385800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:112385400-112386200	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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