Variant report

Variant	rs820570
Chromosome Location	chr3:112401402-112401403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:112387695..112389279-chr3:112399401..112402386,2	MCF-7	breast:
2	chr3:112395899..112398398-chr3:112400973..112403700,2	K562	blood:
3	chr3:112400609..112402894-chr3:112402921..112405427,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1154272	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1249913	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1398092	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs1488263	1.00[YRI][hapmap]
rs2705540	1.00[YRI][hapmap]
rs4682113	1.00[AFR][1000 genomes]
rs6809467	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7373716	1.00[AFR][1000 genomes]
rs7624745	1.00[AFR][1000 genomes]
rs981180	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs981182	1.00[YRI][hapmap];0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv432477	chr3:112390310-112603310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112391400-112407800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:112396400-112404400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:112397000-112406000	Weak transcription	K562	blood
4	chr3:112397400-112405200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:112400000-112401800	Enhancers	HSMM	muscle
6	chr3:112400400-112401600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr3:112400400-112401600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr3:112400400-112401600	Enhancers	NHDF-Ad	bronchial
9	chr3:112400400-112401800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:112400400-112404000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:112400400-112408200	Enhancers	NHLF	lung
12	chr3:112400600-112401600	Enhancers	HSMMtube	muscle
13	chr3:112400600-112401800	Enhancers	NHEK	skin
14	chr3:112400600-112402000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:112400600-112406600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:112400600-112408800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:112400800-112402000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:112401000-112401800	Enhancers	NH-A	brain
19	chr3:112401000-112402000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:112401000-112402800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:112401000-112408800	Enhancers	Muscle Satellite Cultured Cells	--
22	chr3:112401200-112403400	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr3:112401200-112405200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr3:112401200-112406000	Enhancers	A549	lung
25	chr3:112401200-112413800	Weak transcription	Colon Smooth Muscle	Colon
26	chr3:112401400-112401800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr3:112401400-112402400	Weak transcription	HMEC	breast
28	chr3:112401400-112403000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr3:112401400-112403400	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr3:112401400-112403600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr3:112401400-112408200	Enhancers	Osteobl	bone

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