Variant report

Variant	rs4682293
Chromosome Location	chr3:111347891-111347892
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr3:111347689-111348447	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000244720	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1513327	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6437999	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6763154	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6776617	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7639515	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv997756	chr3:111226058-111376585	Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111342000-111348000	Strong transcription	Primary T helper cells PMA-I stimulated	--
2	chr3:111345800-111348600	ZNF genes & repeats	Primary T cells from cord blood	blood
3	chr3:111346000-111348200	ZNF genes & repeats	Dnd41	blood
4	chr3:111346400-111357600	Weak transcription	HMEC	breast
5	chr3:111346600-111357600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:111346800-111348800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
7	chr3:111346800-111356800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr3:111346800-111357000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr3:111346800-111357600	Weak transcription	Thymus	Thymus
10	chr3:111346800-111357800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr3:111347000-111356600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr3:111347000-111367200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:111347600-111348400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
14	chr3:111347600-111355200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr3:111347600-111367800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr3:111347800-111348200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
17	chr3:111347800-111354800	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr3:111347800-111355000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr3:111347800-111355000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr3:111347800-111355000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr3:111347800-111357000	Weak transcription	Fetal Thymus	thymus

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