Variant report

Variant	rs6776617
Chromosome Location	chr3:111372755-111372756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111370939..111373076-chr3:111373570..111375527,2	MCF-7	breast:
2	chr3:111367918..111370721-chr3:111372627..111374789,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1513327	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682293	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6437999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6763154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7619498	1.00[JPT][hapmap]
rs7639515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv997756	chr3:111226058-111376585	Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111363200-111374600	Strong transcription	Primary T cells from cord blood	blood
2	chr3:111364600-111374200	Strong transcription	Dnd41	blood
3	chr3:111364600-111374600	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr3:111365400-111374800	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr3:111365600-111373600	Strong transcription	Primary T helper cells PMA-I stimulated	--
6	chr3:111366000-111377000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:111366200-111373600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr3:111366800-111373400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr3:111368200-111374600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr3:111368800-111373000	Weak transcription	Pancreas	Pancrea
11	chr3:111371400-111374000	Strong transcription	Primary T killer memory cells from peripheral blood	blood
12	chr3:111371600-111373200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr3:111371600-111374000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr3:111371800-111373600	Strong transcription	Thymus	Thymus
15	chr3:111372000-111373200	Enhancers	Primary B cells from cord blood	blood
16	chr3:111372000-111373400	Genic enhancers	Primary B cells from peripheral blood	blood
17	chr3:111372200-111372800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr3:111372200-111373400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr3:111372200-111373400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr3:111372200-111378400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr3:111372200-111378600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr3:111372200-111380600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr3:111372400-111372800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr3:111372400-111380400	Weak transcription	Fetal Thymus	thymus

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