Variant report

Variant	rs4682392
Chromosome Location	chr3:112006172-112006173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11711153	0.85[YRI][hapmap]
rs1844995	0.84[YRI][hapmap]
rs4568110	0.85[YRI][hapmap]
rs4682379	0.85[YRI][hapmap]
rs4682395	0.86[CEU][hapmap];0.92[EUR][1000 genomes]
rs5013874	0.80[CEU][hapmap]
rs6438057	0.85[YRI][hapmap]
rs6766122	0.85[YRI][hapmap]
rs6768523	0.85[YRI][hapmap]
rs6773161	0.85[YRI][hapmap]
rs7642447	0.85[YRI][hapmap]
rs7642496	0.85[YRI][hapmap]
rs9872691	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv877340	chr3:111936961-112013546	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv3949	chr3:111998512-112044060	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112005800-112006600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:112006000-112006200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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