Variant report

Variant	rs4683173
Chromosome Location	chr3:46099012-46099013
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1388605	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs1388608	0.90[ASN][1000 genomes]
rs1392293	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1546076	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs1809733	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs2036293	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2133666	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2373148	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs4321566	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4490404	1.00[ASN][1000 genomes]
rs4493468	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4682801	0.83[CEU][hapmap]
rs4683158	0.84[CEU][hapmap]
rs4683171	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683172	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6764189	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6786959	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6802312	0.83[CEU][hapmap]
rs6809223	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs7622333	0.87[CEU][hapmap]
rs7638309	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs7653682	0.84[CEU][hapmap]
rs9311383	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9311384	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9311385	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9820016	0.84[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2756987	chr3:46016464-46120400	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759145	chr3:46016464-46120400	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1805205	chr3:46032847-46111081	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46096000-46099200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr3:46096400-46106200	Weak transcription	Lung	lung
3	chr3:46099000-46105400	Enhancers	Primary monocytes fromperipheralblood	blood

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