Variant report

Variant	rs2133666
Chromosome Location	chr3:46101891-46101892
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:46035149..46036764-chr3:46100668..46103208,2	K562	blood:
2	chr3:46095387..46098200-chr3:46100479..46102760,2	K562	blood:
3	chr3:46100682..46102669-chr3:46103976..46105710,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1388605	1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs1388606	0.86[EUR][1000 genomes]
rs1388608	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1392293	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1392294	0.91[AFR][1000 genomes]
rs1392295	0.88[AFR][1000 genomes]
rs1491949	0.86[EUR][1000 genomes]
rs1546076	1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs1566419	0.86[EUR][1000 genomes]
rs1809733	1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs1826342	0.86[EUR][1000 genomes]
rs1846619	0.94[AFR][1000 genomes]
rs1873616	0.86[EUR][1000 genomes]
rs2036293	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2133663	0.91[AFR][1000 genomes]
rs2133664	0.94[AFR][1000 genomes]
rs2133665	0.94[AFR][1000 genomes]
rs2173640	0.91[AFR][1000 genomes]
rs2173641	0.89[AFR][1000 genomes]
rs2371	0.92[EUR][1000 genomes]
rs2373148	1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs2373149	0.86[EUR][1000 genomes]
rs2373152	0.84[EUR][1000 genomes]
rs2888511	0.92[EUR][1000 genomes]
rs4321566	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4490403	0.94[AFR][1000 genomes]
rs4490404	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4493468	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4637320	0.94[AFR][1000 genomes]
rs4682811	0.84[EUR][1000 genomes]
rs4683171	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683172	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4683173	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4683177	0.86[EUR][1000 genomes]
rs4683181	0.82[EUR][1000 genomes]
rs6441938	0.86[EUR][1000 genomes]
rs6441939	0.92[EUR][1000 genomes]
rs6764189	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6766332	0.94[AFR][1000 genomes]
rs6767559	0.86[EUR][1000 genomes]
rs6786959	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6807578	0.85[EUR][1000 genomes]
rs6808712	0.86[EUR][1000 genomes]
rs6809223	1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs7610953	0.86[EUR][1000 genomes]
rs7622333	0.86[EUR][1000 genomes]
rs7625348	0.86[EUR][1000 genomes]
rs7638309	1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs902760	0.86[EUR][1000 genomes]
rs9311384	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9311385	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9311388	0.86[EUR][1000 genomes]
rs974380	0.92[EUR][1000 genomes]
rs974381	0.92[EUR][1000 genomes]
rs9811555	0.92[EUR][1000 genomes]
rs9820016	1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs9869458	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2756987	chr3:46016464-46120400	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759145	chr3:46016464-46120400	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1805205	chr3:46032847-46111081	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46096400-46106200	Weak transcription	Lung	lung
2	chr3:46099000-46105400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:46100600-46102600	Weak transcription	Right Atrium	heart
4	chr3:46100800-46102600	Weak transcription	Adipose Nuclei	Adipose
5	chr3:46100800-46103600	Weak transcription	Spleen	Spleen
6	chr3:46101000-46106400	Weak transcription	Primary B cells from cord blood	blood
7	chr3:46101200-46102400	Enhancers	GM12878-XiMat	blood
8	chr3:46101200-46104200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr3:46101600-46102000	Enhancers	Fetal Heart	heart
10	chr3:46101600-46102400	Enhancers	Psoas Muscle	Psoas
11	chr3:46101600-46107000	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr3:46101800-46104200	Enhancers	Monocytes-CD14+_RO01746	blood

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