Variant report

Variant	rs1392295
Chromosome Location	chr3:46101104-46101105
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:46035149..46036764-chr3:46100668..46103208,2	K562	blood:
2	chr3:46095387..46098200-chr3:46100479..46102760,2	K562	blood:
3	chr3:46100682..46102669-chr3:46103976..46105710,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11130082	0.96[CEU][hapmap]
rs13074382	0.82[CHB][hapmap]
rs13081213	0.82[CHB][hapmap]
rs13086858	0.96[CEU][hapmap]
rs13090194	0.82[CHB][hapmap]
rs1392293	0.92[AFR][1000 genomes]
rs1392294	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1392296	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1392297	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1392298	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1545985	0.80[CEU][hapmap]
rs1846619	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1873000	0.96[CEU][hapmap]
rs1873001	0.84[CEU][hapmap]
rs2036297	0.80[EUR][1000 genomes]
rs2102055	0.82[CHB][hapmap]
rs2129879	0.92[CEU][hapmap]
rs2133660	0.88[CEU][hapmap]
rs2133663	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2133664	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2133665	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2133666	0.88[AFR][1000 genomes]
rs2171528	0.92[CEU][hapmap]
rs2171529	0.92[CEU][hapmap]
rs2173640	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2173641	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2230322	0.82[CHB][hapmap]
rs35669129	0.82[CHB][hapmap]
rs3851346	0.82[CHB][hapmap]
rs4490403	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4493468	0.86[AFR][1000 genomes]
rs4637320	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683159	0.96[CEU][hapmap]
rs4683170	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6766332	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6774629	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7612402	0.93[CEU][hapmap]
rs7628447	0.96[CEU][hapmap]
rs9869609	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2756987	chr3:46016464-46120400	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759145	chr3:46016464-46120400	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1805205	chr3:46032847-46111081	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1392295	CCR3	cis	Whole Blood	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46096400-46106200	Weak transcription	Lung	lung
2	chr3:46099000-46105400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:46099800-46101400	Enhancers	Primary B cells from peripheral blood	blood
4	chr3:46100400-46101200	Flanking Active TSS	GM12878-XiMat	blood
5	chr3:46100600-46101200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr3:46100600-46102600	Weak transcription	Right Atrium	heart
7	chr3:46100800-46102600	Weak transcription	Adipose Nuclei	Adipose
8	chr3:46100800-46103600	Weak transcription	Spleen	Spleen
9	chr3:46101000-46101400	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr3:46101000-46106400	Weak transcription	Primary B cells from cord blood	blood

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