Variant report

Variant	rs2036297
Chromosome Location	chr3:46172903-46172904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46167391..46169192-chr3:46171465..46173672,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11130082	0.91[CEU][hapmap]
rs13063527	0.80[ASN][1000 genomes]
rs13063635	0.97[ASN][1000 genomes]
rs13068570	0.80[ASN][1000 genomes]
rs13068572	0.81[ASN][1000 genomes]
rs13074382	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs13075528	0.80[ASN][1000 genomes]
rs13081213	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs13085367	0.97[ASN][1000 genomes]
rs13086858	0.91[CEU][hapmap]
rs13089554	0.80[ASN][1000 genomes]
rs13090194	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs13093179	0.80[ASN][1000 genomes]
rs13095602	0.80[ASN][1000 genomes]
rs13095717	0.80[ASN][1000 genomes]
rs1392294	0.80[EUR][1000 genomes]
rs1392295	0.80[EUR][1000 genomes]
rs1392296	0.89[EUR][1000 genomes]
rs1392297	0.88[EUR][1000 genomes]
rs1392298	0.90[EUR][1000 genomes]
rs1491950	0.80[ASN][1000 genomes]
rs1491951	0.80[ASN][1000 genomes]
rs17215981	0.80[ASN][1000 genomes]
rs17282238	0.91[ASN][1000 genomes]
rs1873000	0.95[CEU][hapmap]
rs1873001	0.96[CEU][hapmap]
rs2102055	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2129879	0.96[CEU][hapmap]
rs2133660	1.00[CEU][hapmap]
rs2133663	0.80[EUR][1000 genomes]
rs2133664	0.80[EUR][1000 genomes]
rs2133665	0.80[EUR][1000 genomes]
rs2171528	0.96[CEU][hapmap]
rs2171529	0.96[CEU][hapmap]
rs2173640	0.80[EUR][1000 genomes]
rs2230322	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs34093271	0.80[ASN][1000 genomes]
rs34452002	0.80[ASN][1000 genomes]
rs34460587	0.80[ASN][1000 genomes]
rs34492478	0.80[ASN][1000 genomes]
rs35110864	0.80[ASN][1000 genomes]
rs35464221	0.83[ASN][1000 genomes]
rs35539222	0.80[ASN][1000 genomes]
rs35581648	0.91[ASN][1000 genomes]
rs35669129	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs35772789	0.80[ASN][1000 genomes]
rs3851346	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs4373103	0.80[ASN][1000 genomes]
rs4490403	0.80[EUR][1000 genomes]
rs4637320	0.80[EUR][1000 genomes]
rs4683159	0.92[CEU][hapmap]
rs6766332	0.80[EUR][1000 genomes]
rs6774629	0.90[EUR][1000 genomes]
rs6774742	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6789386	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6789719	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71327023	0.80[ASN][1000 genomes]
rs71327024	0.80[ASN][1000 genomes]
rs71327025	0.80[ASN][1000 genomes]
rs71327027	0.97[ASN][1000 genomes]
rs7612402	0.96[CEU][hapmap]
rs7628447	0.91[CEU][hapmap]
rs9838450	0.80[ASN][1000 genomes]
rs9869609	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2036297	CCR3	cis	Whole Blood	GTEx

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46167000-46175600	Weak transcription	Fetal Lung	lung
2	chr3:46168800-46178200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:46169800-46173400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:46170000-46177200	Enhancers	Fetal Thymus	thymus
5	chr3:46170800-46174200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr3:46171600-46175400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr3:46171800-46173000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:46171800-46173400	Weak transcription	Spleen	Spleen
9	chr3:46171800-46174000	Enhancers	Adipose Nuclei	Adipose
10	chr3:46172200-46173400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr3:46172200-46174800	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:46172600-46173800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:46172600-46174000	Enhancers	Liver	Liver
14	chr3:46172800-46173200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:46172800-46173200	Weak transcription	Placenta	Placenta
16	chr3:46172800-46173400	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr3:46172800-46173600	Active TSS	Primary hematopoietic stem cells	blood
18	chr3:46172800-46174200	Active TSS	Primary B cells from cord blood	blood
19	chr3:46172800-46174600	Weak transcription	Duodenum Mucosa	Duodenum

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