Variant report

Variant	rs35581648
Chromosome Location	chr3:46170897-46170898
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46149539..46152315-chr3:46168852..46171063,2	K562	blood:
2	chr3:46169290..46171223-chr3:46177395..46178997,2	K562	blood:

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs13059238	0.81[AMR][1000 genomes]
rs13063527	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13063635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13066062	0.90[AMR][1000 genomes]
rs13068570	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13068572	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13069079	0.90[AMR][1000 genomes]
rs13069742	0.80[EUR][1000 genomes]
rs13071283	0.81[AMR][1000 genomes]
rs13072267	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13075528	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13075758	0.90[AMR][1000 genomes]
rs13078739	0.81[AMR][1000 genomes]
rs13079869	0.85[AMR][1000 genomes]
rs13081151	0.95[AMR][1000 genomes]
rs13085367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13089554	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13091868	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13093179	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13095602	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13095717	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13096741	0.95[AMR][1000 genomes]
rs1491950	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1491951	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17214952	0.81[AMR][1000 genomes]
rs17215008	0.90[AMR][1000 genomes]
rs17215981	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17280623	0.81[AMR][1000 genomes]
rs17282175	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17282238	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17330872	0.90[AMR][1000 genomes]
rs2036297	0.91[ASN][1000 genomes]
rs2171531	0.80[AMR][1000 genomes]
rs33910087	0.90[AMR][1000 genomes]
rs34000569	0.90[AMR][1000 genomes]
rs34047915	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34093271	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34127208	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34283240	0.90[AMR][1000 genomes]
rs34324101	0.90[AMR][1000 genomes]
rs34339943	0.95[AMR][1000 genomes]
rs34340587	0.95[AMR][1000 genomes]
rs34381952	0.81[AMR][1000 genomes]
rs34438204	0.95[AMR][1000 genomes]
rs34442130	0.90[AMR][1000 genomes]
rs34452002	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34460587	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34492478	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34562820	0.95[AMR][1000 genomes]
rs34619093	0.95[AMR][1000 genomes]
rs34679077	0.95[AMR][1000 genomes]
rs34718164	0.95[AMR][1000 genomes]
rs34754340	0.90[AMR][1000 genomes]
rs34766614	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34836513	0.90[AMR][1000 genomes]
rs34849862	0.90[AMR][1000 genomes]
rs34863575	0.95[AMR][1000 genomes]
rs35110864	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35161099	0.95[AMR][1000 genomes]
rs35209528	0.90[AMR][1000 genomes]
rs35334665	0.95[AMR][1000 genomes]
rs35464221	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35501575	0.90[AMR][1000 genomes]
rs35516580	0.95[AMR][1000 genomes]
rs35525815	0.81[AMR][1000 genomes]
rs35539222	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35751180	0.95[AMR][1000 genomes]
rs35772789	0.95[AMR][1000 genomes]
rs35855315	0.81[AMR][1000 genomes]
rs35883205	0.95[AMR][1000 genomes]
rs36023124	0.90[AMR][1000 genomes]
rs36039366	0.81[AMR][1000 genomes]
rs36057789	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs36122610	0.90[AMR][1000 genomes]
rs3851346	0.95[AMR][1000 genomes]
rs41289616	0.81[AMR][1000 genomes]
rs41289622	0.90[AMR][1000 genomes]
rs4373103	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4388012	0.81[AMR][1000 genomes]
rs55920693	0.80[AMR][1000 genomes]
rs56332428	0.81[AMR][1000 genomes]
rs6774742	0.83[ASN][1000 genomes]
rs6789386	0.81[ASN][1000 genomes]
rs6789719	0.83[ASN][1000 genomes]
rs71325095	0.81[AMR][1000 genomes]
rs71325096	0.90[AMR][1000 genomes]
rs71325098	0.90[AMR][1000 genomes]
rs71325100	0.90[AMR][1000 genomes]
rs71325101	0.81[AMR][1000 genomes]
rs71325102	0.81[AMR][1000 genomes]
rs71327003	0.90[AMR][1000 genomes]
rs71327006	0.95[AMR][1000 genomes]
rs71327007	0.95[AMR][1000 genomes]
rs71327009	0.95[AMR][1000 genomes]
rs71327010	0.95[AMR][1000 genomes]
rs71327014	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71327015	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71327017	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71327021	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71327023	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71327024	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71327025	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71327027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71615438	0.90[AMR][1000 genomes]
rs9824651	0.80[EUR][1000 genomes]
rs9825081	0.80[EUR][1000 genomes]
rs9838450	0.83[ASN][1000 genomes]
rs9845382	0.80[EUR][1000 genomes]
rs9877748	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46164000-46171000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:46166200-46171200	Weak transcription	Primary B cells from cord blood	blood
3	chr3:46166600-46172600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:46166800-46171400	Weak transcription	Placenta	Placenta
5	chr3:46167000-46171000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr3:46167000-46171800	Weak transcription	Adipose Nuclei	Adipose
7	chr3:46167000-46175600	Weak transcription	Fetal Lung	lung
8	chr3:46168800-46171000	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr3:46168800-46178200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr3:46169000-46172600	Enhancers	Dnd41	blood
11	chr3:46169800-46171000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:46169800-46173400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:46170000-46177200	Enhancers	Fetal Thymus	thymus
14	chr3:46170600-46172800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:46170800-46171400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:46170800-46171800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr3:46170800-46171800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:46170800-46171800	Enhancers	Spleen	Spleen
19	chr3:46170800-46172000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr3:46170800-46172000	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr3:46170800-46172000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr3:46170800-46172600	Enhancers	Primary T cells fromperipheralblood	blood
23	chr3:46170800-46174200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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