Variant report

Variant	rs17282175
Chromosome Location	chr3:46173642-46173643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46167391..46169192-chr3:46171465..46173672,2	K562	blood:

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs13063527	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13063635	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13066062	0.86[AMR][1000 genomes]
rs13068570	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13068572	0.93[EUR][1000 genomes]
rs13069079	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs13069742	0.82[EUR][1000 genomes]
rs13071283	1.00[CEU][hapmap]
rs13072267	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13074382	1.00[CEU][hapmap]
rs13075528	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13075758	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs13078739	1.00[CEU][hapmap]
rs13079869	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs13081151	0.90[AMR][1000 genomes]
rs13081213	0.90[CEU][hapmap]
rs13085367	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13089554	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13090194	1.00[CEU][hapmap]
rs13091868	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13093179	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13095602	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13095717	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13096741	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1491950	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1491951	0.82[EUR][1000 genomes]
rs17214952	1.00[CEU][hapmap]
rs17215008	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs17215981	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17280623	1.00[CEU][hapmap]
rs17282238	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17330872	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs2102055	1.00[CEU][hapmap]
rs2230322	1.00[CEU][hapmap]
rs33910087	0.86[AMR][1000 genomes]
rs34000569	0.86[AMR][1000 genomes]
rs34047915	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34093271	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34127208	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34283240	0.86[AMR][1000 genomes]
rs34324101	0.86[AMR][1000 genomes]
rs34339943	0.90[AMR][1000 genomes]
rs34340587	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34438204	0.90[AMR][1000 genomes]
rs34442130	0.86[AMR][1000 genomes]
rs34452002	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34460587	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34492478	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34562820	0.90[AMR][1000 genomes]
rs34619093	0.90[AMR][1000 genomes]
rs34679077	0.90[AMR][1000 genomes]
rs34718164	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34754340	0.86[AMR][1000 genomes]
rs34766614	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34836513	0.86[AMR][1000 genomes]
rs34849862	0.86[AMR][1000 genomes]
rs34863575	0.90[AMR][1000 genomes]
rs35110864	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35161099	0.90[AMR][1000 genomes]
rs35209528	0.86[AMR][1000 genomes]
rs35334665	0.90[AMR][1000 genomes]
rs35464221	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35501575	0.86[AMR][1000 genomes]
rs35516580	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35539222	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35581648	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35669129	1.00[CEU][hapmap]
rs35751180	0.90[AMR][1000 genomes]
rs35772789	0.90[AMR][1000 genomes]
rs35883205	0.90[AMR][1000 genomes]
rs36023124	0.86[AMR][1000 genomes]
rs36057789	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs36122610	0.86[AMR][1000 genomes]
rs3851346	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs41289622	0.86[AMR][1000 genomes]
rs4373103	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4388012	1.00[CEU][hapmap]
rs6775046	1.00[JPT][hapmap]
rs6785091	1.00[CEU][hapmap]
rs71325096	0.86[AMR][1000 genomes]
rs71325098	0.86[AMR][1000 genomes]
rs71325100	0.86[AMR][1000 genomes]
rs71327003	0.86[AMR][1000 genomes]
rs71327006	0.90[AMR][1000 genomes]
rs71327007	0.90[AMR][1000 genomes]
rs71327009	0.90[AMR][1000 genomes]
rs71327010	0.90[AMR][1000 genomes]
rs71327014	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71327015	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71327017	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71327021	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71327023	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71327024	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71327025	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71327027	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71615438	0.86[AMR][1000 genomes]
rs7624155	1.00[JPT][hapmap]
rs9824651	0.82[EUR][1000 genomes]
rs9825081	0.82[EUR][1000 genomes]
rs9845382	0.82[EUR][1000 genomes]
rs9877748	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46167000-46175600	Weak transcription	Fetal Lung	lung
2	chr3:46168800-46178200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:46170000-46177200	Enhancers	Fetal Thymus	thymus
4	chr3:46170800-46174200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr3:46171600-46175400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr3:46171800-46174000	Enhancers	Adipose Nuclei	Adipose
7	chr3:46172200-46174800	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:46172600-46173800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:46172600-46174000	Enhancers	Liver	Liver
10	chr3:46172800-46174200	Active TSS	Primary B cells from cord blood	blood
11	chr3:46172800-46174600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr3:46173000-46176800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:46173200-46173800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr3:46173200-46175000	Weak transcription	GM12878-XiMat	blood
15	chr3:46173200-46175200	Enhancers	Placenta	Placenta
16	chr3:46173400-46173800	Enhancers	Spleen	Spleen
17	chr3:46173400-46174000	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr3:46173400-46174400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:46173400-46175200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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