Variant report

Variant	rs6441938
Chromosome Location	chr3:46045619-46045620
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46038061..46039576-chr3:46044215..46045732,2	K562	blood:
2	chr3:46044700..46047149-chr3:46047918..46051696,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1388605	0.95[CEU][hapmap]
rs1392288	0.85[CEU][hapmap]
rs1392293	0.84[EUR][1000 genomes]
rs1546076	0.95[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap]
rs1809733	0.95[CEU][hapmap]
rs2036293	0.87[EUR][1000 genomes]
rs2101446	0.82[EUR][1000 genomes]
rs2133666	0.86[EUR][1000 genomes]
rs2371	0.91[EUR][1000 genomes]
rs2373148	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes]
rs2373155	0.85[CEU][hapmap]
rs2742362	1.00[ASW][hapmap]
rs2888511	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4321566	0.88[EUR][1000 genomes]
rs4490404	0.85[EUR][1000 genomes]
rs4493468	0.86[EUR][1000 genomes]
rs4682801	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs4683158	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4683171	0.87[EUR][1000 genomes]
rs6441934	1.00[LWK][hapmap]
rs6441939	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6786959	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6802312	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs6809223	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7610953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7622333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7625348	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7638309	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes]
rs7653682	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs904634	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs974380	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs974381	0.91[EUR][1000 genomes]
rs9811555	0.91[EUR][1000 genomes]
rs9820016	0.95[CEU][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap]
rs9869458	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2756987	chr3:46016464-46120400	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759145	chr3:46016464-46120400	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1805205	chr3:46032847-46111081	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46037600-46053000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:46037600-46064600	Weak transcription	Gastric	stomach
3	chr3:46038200-46047400	Weak transcription	Psoas Muscle	Psoas
4	chr3:46043200-46047600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:46045600-46046000	Enhancers	Placenta	Placenta

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