Variant report

Variant	rs4683389
Chromosome Location	chr3:140771419-140771420
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140766170..140768825-chr3:140770762..140772841,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11713925	1.00[ASN][1000 genomes]
rs2162435	0.83[AFR][1000 genomes]
rs6439975	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432488	chr3:140752302-140790302	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3342822	chr3:140769087-140772135	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv591889	chr3:140769896-140778138	Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140769400-140771600	Bivalent Enhancer	Spleen	Spleen
2	chr3:140769400-140771800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:140769400-140772200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:140769400-140772400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:140769400-140772600	Active TSS	Fetal Kidney	kidney
6	chr3:140769600-140771600	Active TSS	Pancreas	Pancrea
7	chr3:140769600-140771800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:140769600-140772000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr3:140769600-140772000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr3:140769600-140772000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:140769600-140772000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:140769600-140772000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
13	chr3:140769600-140772000	Active TSS	Left Ventricle	heart
14	chr3:140769600-140772000	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
15	chr3:140769600-140772200	Active TSS	Right Atrium	heart
16	chr3:140769800-140771800	Active TSS	Aorta	Aorta
17	chr3:140769800-140772000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:140769800-140772000	Bivalent/Poised TSS	Brain Angular Gyrus	brain
19	chr3:140769800-140772000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
20	chr3:140769800-140772600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:140770000-140772000	Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr3:140770000-140772000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:140770000-140772400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:140770200-140772000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr3:140770400-140771600	Flanking Bivalent TSS/Enh	Thymus	Thymus
26	chr3:140770400-140771800	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
27	chr3:140770400-140771800	Flanking Bivalent TSS/Enh	Placenta	Placenta
28	chr3:140770400-140772000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
29	chr3:140770600-140771600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
30	chr3:140770600-140771600	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
31	chr3:140770600-140771800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
32	chr3:140770600-140771800	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
33	chr3:140770600-140771800	Bivalent/Poised TSS	Fetal Lung	lung
34	chr3:140770600-140771800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
35	chr3:140770600-140772000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr3:140770600-140772000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
37	chr3:140770600-140772000	Flanking Active TSS	Right Ventricle	heart
38	chr3:140770800-140771800	Bivalent Enhancer	Liver	Liver
39	chr3:140770800-140771800	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
40	chr3:140770800-140771800	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
41	chr3:140770800-140771800	Flanking Bivalent TSS/Enh	HSMM	muscle
42	chr3:140770800-140772000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
43	chr3:140770800-140772000	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:140770800-140772000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr3:140770800-140772000	Active TSS	Fetal Heart	heart
46	chr3:140770800-140772600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr3:140771000-140771600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
48	chr3:140771000-140771600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
49	chr3:140771000-140771600	Flanking Bivalent TSS/Enh	Brain Anterior Caudate	brain
50	chr3:140771000-140771600	Flanking Bivalent TSS/Enh	Brain Substantia Nigra	brain

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