Variant report

Variant	rs6439975
Chromosome Location	chr3:140773151-140773152
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11713925	0.82[MKK][hapmap]
rs2162435	0.90[AFR][1000 genomes]
rs4683389	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs890527	0.84[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432488	chr3:140752302-140790302	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv591889	chr3:140769896-140778138	Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140772000-140773800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:140772000-140774000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:140772000-140774000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:140772000-140774400	Weak transcription	Left Ventricle	heart
5	chr3:140772000-140776200	Enhancers	Pancreas	Pancrea
6	chr3:140772000-140779000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:140772000-140782600	Weak transcription	Psoas Muscle	Psoas
8	chr3:140772200-140774600	Weak transcription	Right Ventricle	heart
9	chr3:140772200-140775000	Weak transcription	Right Atrium	heart
10	chr3:140772200-140775400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:140772200-140775800	Weak transcription	Fetal Brain Female	brain
12	chr3:140772200-140777400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:140772200-140777600	Enhancers	Fetal Heart	heart
14	chr3:140772200-140779000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr3:140772400-140773200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr3:140772400-140773400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr3:140772600-140773200	Bivalent Enhancer	Fetal Muscle Leg	muscle
18	chr3:140772600-140774000	Weak transcription	Brain Germinal Matrix	brain
19	chr3:140772600-140774400	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:140772600-140774400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:140773000-140773200	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr3:140773000-140773400	Enhancers	Dnd41	blood
23	chr3:140773000-140775000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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