Variant report

Variant	rs4687958
Chromosome Location	chr3:118616404-118616405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11927719	0.89[YRI][hapmap]
rs12489856	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs1474231	0.84[YRI][hapmap]
rs1521293	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1581374	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2110369	0.83[YRI][hapmap]
rs6802658	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs73185803	0.81[AFR][1000 genomes]
rs7610212	0.86[YRI][hapmap]
rs9821861	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118604000-118621400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:118604200-118621400	Weak transcription	Brain Angular Gyrus	brain
3	chr3:118604400-118620000	Weak transcription	Brain Anterior Caudate	brain
4	chr3:118604400-118621400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:118604400-118621400	Weak transcription	Brain Substantia Nigra	brain
6	chr3:118608400-118621400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:118610000-118618200	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:118611600-118621000	Weak transcription	Ovary	ovary
9	chr3:118612200-118625600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr3:118613800-118621000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr3:118614000-118619000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:118614000-118619800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:118614200-118620200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr3:118614200-118625000	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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