Variant report

Variant	rs4688636
Chromosome Location	chr3:61555637-61555638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:61554363..61558137-chr3:61559653..61562085,4	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1574016	0.86[CHB][hapmap]
rs17669146	0.86[CHB][hapmap]
rs1878772	0.86[CHB][hapmap]
rs6802290	0.89[ASN][1000 genomes]
rs7616682	0.85[ASN][1000 genomes]
rs7640434	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap]
rs9808938	0.86[CHB][hapmap]
rs9827952	0.86[CHB][hapmap]
rs9845678	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432423	chr3:61100255-61606060	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv834711	chr3:61413762-61612539	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1008615	chr3:61455419-61679037	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv822105	chr3:61531517-61556259	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:61550600-61568600	Weak transcription	Pancreas	Pancrea
2	chr3:61550800-61556800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:61550800-61556800	Weak transcription	Ovary	ovary
4	chr3:61550800-61557600	Weak transcription	Psoas Muscle	Psoas
5	chr3:61550800-61558400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:61550800-61574200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:61551000-61555800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr3:61551000-61556800	Weak transcription	NH-A	brain
9	chr3:61551000-61557400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:61551000-61557600	Weak transcription	Aorta	Aorta
11	chr3:61551000-61557600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:61551000-61557600	Weak transcription	Right Atrium	heart
13	chr3:61551000-61559800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:61551000-61559800	Weak transcription	NHEK	skin
15	chr3:61551000-61561600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr3:61551200-61555800	Weak transcription	Brain Anterior Caudate	brain
17	chr3:61551200-61556400	Weak transcription	Fetal Brain Male	brain
18	chr3:61551200-61557600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr3:61551200-61560000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:61551400-61555800	Weak transcription	Brain Hippocampus Middle	brain
21	chr3:61551600-61556800	Weak transcription	Right Ventricle	heart
22	chr3:61551600-61557600	Weak transcription	Fetal Kidney	kidney
23	chr3:61551600-61559800	Weak transcription	NHLF	lung
24	chr3:61551600-61563800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr3:61551800-61556200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr3:61552000-61555800	Weak transcription	Osteobl	bone
27	chr3:61552000-61556200	Weak transcription	HSMM	muscle
28	chr3:61552200-61555800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr3:61552200-61556800	Weak transcription	NHDF-Ad	bronchial
30	chr3:61552200-61563400	Weak transcription	Colon Smooth Muscle	Colon
31	chr3:61552600-61556800	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr3:61552600-61557200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:61552600-61557400	Weak transcription	Left Ventricle	heart
34	chr3:61552800-61557200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr3:61552800-61557400	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr3:61553000-61558200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr3:61553400-61559800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr3:61553600-61556600	Enhancers	Fetal Heart	heart
39	chr3:61553600-61558200	Weak transcription	Lung	lung
40	chr3:61553600-61566400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr3:61554600-61555800	Enhancers	H1 Cell Line	embryonic stem cell
42	chr3:61554800-61556000	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr3:61554800-61556000	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr3:61554800-61556200	Enhancers	HepG2	liver
45	chr3:61554800-61557400	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr3:61555000-61555800	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr3:61555000-61556400	Enhancers	Liver	Liver
48	chr3:61555200-61556000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr3:61555400-61555800	Weak transcription	Brain Angular Gyrus	brain
50	chr3:61555400-61556000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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