Variant report

Variant	rs7640434
Chromosome Location	chr3:61567114-61567115
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37836166..37836904-chr3:61566629..61567487,2	MCF-7	breast:
2	chr3:61563961..61566388-chr3:61566827..61568499,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1574016	0.86[CHB][hapmap]
rs17669146	0.86[CHB][hapmap]
rs1878772	0.86[CHB][hapmap]
rs4688636	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap]
rs9808938	0.86[CHB][hapmap]
rs9827952	0.86[CHB][hapmap]
rs9845678	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432423	chr3:61100255-61606060	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv834711	chr3:61413762-61612539	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1008615	chr3:61455419-61679037	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:61550600-61568600	Weak transcription	Pancreas	Pancrea
2	chr3:61550800-61574200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:61558400-61579800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:61560600-61575200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:61560800-61568800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:61560800-61568800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:61560800-61569400	Weak transcription	NHEK	skin
8	chr3:61560800-61575200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:61561800-61569200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:61562400-61568200	Weak transcription	Ovary	ovary
11	chr3:61562400-61575200	Weak transcription	HSMM	muscle
12	chr3:61562400-61578600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:61564600-61569400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:61564600-61570400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr3:61564600-61575400	Weak transcription	HUVEC	blood vessel
16	chr3:61564600-61593400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr3:61564800-61568800	Weak transcription	Psoas Muscle	Psoas
18	chr3:61564800-61577000	Weak transcription	Fetal Intestine Large	intestine
19	chr3:61565000-61568200	Weak transcription	Lung	lung
20	chr3:61565000-61570000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr3:61565000-61579800	Weak transcription	Adipose Nuclei	Adipose
22	chr3:61565200-61588800	Weak transcription	Fetal Intestine Small	intestine
23	chr3:61565600-61569400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr3:61565600-61575200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr3:61566200-61567200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr3:61566200-61570000	Enhancers	Fetal Heart	heart
27	chr3:61566400-61567200	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr3:61566400-61567200	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr3:61566400-61567200	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr3:61566400-61567200	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr3:61566400-61567200	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr3:61566400-61567200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr3:61566400-61567200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:61566400-61567200	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr3:61566400-61567200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr3:61566400-61567200	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr3:61566400-61567400	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr3:61566600-61567200	Enhancers	H1 Cell Line	embryonic stem cell
39	chr3:61566600-61567200	Enhancers	H9 Cell Line	embryonic stem cell
40	chr3:61566600-61567200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr3:61566600-61567200	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr3:61566600-61567200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr3:61566600-61567200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr3:61566600-61567200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr3:61566600-61567200	Enhancers	Brain Anterior Caudate	brain
46	chr3:61566600-61567200	Enhancers	Colon Smooth Muscle	Colon
47	chr3:61566600-61567200	Enhancers	Fetal Kidney	kidney
48	chr3:61566600-61567200	Enhancers	Right Atrium	heart
49	chr3:61566600-61567200	Enhancers	Right Ventricle	heart
50	chr3:61566600-61567200	Enhancers	Skeletal Muscle Female	skeletal muscle

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