Variant report

Variant	rs4690816
Chromosome Location	chr4:166336529-166336530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10222710	0.80[ASN][1000 genomes]
rs10223009	0.85[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.84[MEX][hapmap];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1898593	0.85[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2083158	0.85[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2083159	0.85[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28668614	0.81[EUR][1000 genomes]
rs4691195	0.85[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4691197	0.81[EUR][1000 genomes]
rs6842167	0.95[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs6853271	0.80[ASN][1000 genomes]
rs7441041	0.85[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7663386	0.85[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.83[MEX][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7663945	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7671073	0.89[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166319600-166361800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:166320000-166339000	Weak transcription	Brain Hippocampus Middle	brain
3	chr4:166320000-166339200	Weak transcription	Brain Substantia Nigra	brain
4	chr4:166326000-166339000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:166326400-166338800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr4:166326600-166337200	Weak transcription	Aorta	Aorta
7	chr4:166326800-166364400	Weak transcription	Brain Germinal Matrix	brain
8	chr4:166327400-166339200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:166330800-166337200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:166332800-166339200	Weak transcription	Brain Angular Gyrus	brain
11	chr4:166333800-166337600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:166334800-166342600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr4:166334800-166348000	Weak transcription	Pancreas	Pancrea
14	chr4:166335000-166342400	Weak transcription	HepG2	liver
15	chr4:166335200-166336800	Enhancers	Fetal Brain Male	brain
16	chr4:166336400-166336800	Weak transcription	Brain Anterior Caudate	brain
17	chr4:166336400-166338000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr4:166336400-166339600	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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